RNA–Protein interactions for RNA: ENST00000618700.4

UPF3A-211, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 1,210 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-211ENST00000618700 SPIRE2Q8WWL2 714 aa21.78■■□□□ 1.08
UPF3A-211ENST00000618700 CCDC34Q96HJ3 373 aa21.78■■□□□ 1.08
UPF3A-211ENST00000618700 SCLT1Q96NL6 688 aa21.78■■□□□ 1.08
UPF3A-211ENST00000618700 FIZ1Q96SL8 496 aa21.78■■□□□ 1.08
UPF3A-211ENST00000618700 GCOM2Q9BZD3 368 aaPredicted RBP21.78■■□□□ 1.08
UPF3A-211ENST00000618700 LARSQ9P2J5 1176 aaKnown RBP21.78■■□□□ 1.08
UPF3A-211ENST00000618700 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.77■■□□□ 1.08
UPF3A-211ENST00000618700 LRRIQ4A6NIV6 560 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 H0YGN5 161 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 GHRP10912 638 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 IDEP14735 1019 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 GAP43P17677 238 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 EIF4BP23588 611 aaKnown RBP21.77■■□□□ 1.08
UPF3A-211ENST00000618700 DPYDQ12882 1025 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 POSTNQ15063 836 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 ODR4Q5SWX8 454 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 TSHZ1Q6ZSZ6 1077 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 UNC13DQ70J99 1090 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 TMEM199Q8N511 208 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 USP38Q8NB14 1042 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 BADQ92934 168 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 NTPCRQ9BSD7 190 aaKnown RBP21.77■■□□□ 1.08
UPF3A-211ENST00000618700 KIFC3Q9BVG8 833 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 ARHGAP28Q9P2N2 729 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 SEL1LQ9UBV2 794 aa21.77■■□□□ 1.08
UPF3A-211ENST00000618700 CEP290O15078 2479 aa21.77■■□□□ 1.07
UPF3A-211ENST00000618700 RBAK-RBAKDNI3L0D1 243 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 KLRC4O43908 158 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 CSF2RAP15509 400 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 NCKAP1LP55160 1127 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 EHHADHQ08426 723 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 COASYQ13057 564 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 SRGAP1Q7Z6B7 1085 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 FAM228AQ86W67 206 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 SFR1Q86XK3 245 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 CCDC65Q8IXS2 484 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 MYCT1Q8N699 235 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 DEPTORQ8TB45 409 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 KCNN1Q92952 543 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 ZHX3Q9H4I2 956 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 MINDY3Q9H8M7 445 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 AGO3Q9H9G7 860 aaKnown RBP21.76■■□□□ 1.07
UPF3A-211ENST00000618700 OLFML3Q9NRN5 406 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 PANK4Q9NVE7 773 aa21.76■■□□□ 1.07
UPF3A-211ENST00000618700 NOC2LQ9Y3T9 749 aaKnown RBP21.76■■□□□ 1.07
UPF3A-211ENST00000618700 PVALEFA0A1B0GWK0 134 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 MBTD1Q05BQ5 628 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 INO80BQ9C086 356 aaPredicted RBP21.75■■□□□ 1.07
UPF3A-211ENST00000618700 CCDC113Q9H0I3 377 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 C2orf40Q9H1Z8 148 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 ERVK-5Q9HDB9 667 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 KMT5AQ9NQR1 393 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 KCNG1Q9UIX4 513 aa21.75■■□□□ 1.07
UPF3A-211ENST00000618700 CCDC169A6NNP5 214 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 TRAK2O60296 914 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 CSDE1O75534 798 aaKnown RBP21.74■■□□□ 1.07
UPF3A-211ENST00000618700 MBD3O95983 291 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 MAPTP10636 758 aaKnown RBP21.74■■□□□ 1.07
UPF3A-211ENST00000618700 FPGSQ05932 587 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 PPIGQ13427 754 aaKnown RBP eCLIP21.74■■□□□ 1.07
UPF3A-211ENST00000618700 PNOCQ13519 176 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 PLEKHG4Q58EX7 1191 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 ZBTB8OSQ8IWT0 167 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 TMEM161BQ8NDZ6 487 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 SPATA20Q8TB22 786 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 IFIH1Q9BYX4 1025 aaKnown RBP21.74■■□□□ 1.07
UPF3A-211ENST00000618700 TET1Q8NFU7 2136 aa21.74■■□□□ 1.07
UPF3A-211ENST00000618700 SLC16A4O15374 487 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 RPS6KA5O75582 802 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 PFKMP08237 780 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 CD52P31358 61 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 EFNA5P52803 228 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 SMTNP53814 917 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 AMHR2Q16671 573 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 HERC4Q5GLZ8 1057 aaPredicted RBP21.73■■□□□ 1.07
UPF3A-211ENST00000618700 DEFB128Q7Z7B8 93 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 FAM178BQ8IXR5 827 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 FZD8Q9H461 694 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 CLSTN2Q9H4D0 955 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 ST6GALNAC4Q9H4F1 302 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 IL23AQ9NPF7 189 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 HOOK1Q9UJC3 728 aaKnown RBP21.73■■□□□ 1.07
UPF3A-211ENST00000618700 PADI3Q9ULW8 664 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 PHLPP2Q6ZVD8 1323 aa21.73■■□□□ 1.07
UPF3A-211ENST00000618700 H0YCG3 227 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 INO80B-WBP1J3KQ70 363 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 RPN1P04843 607 aaKnown RBP21.72■■□□□ 1.07
UPF3A-211ENST00000618700 SCP2P22307 547 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 FGFR4P22455 802 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 SFPQP23246 707 aaKnown RBP eCLIP21.72■■□□□ 1.07
UPF3A-211ENST00000618700 PAK2Q13177 524 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 PCBP1Q15365 356 aaKnown RBP eCLIP21.72■■□□□ 1.07
UPF3A-211ENST00000618700 FAM187BQ17R55 369 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 TCTN1Q2MV58 587 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 TAS1R3Q7RTX0 852 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 SLC17A8Q8NDX2 589 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 LBHD1Q9BQE6 289 aaPredicted RBP21.72■■□□□ 1.07
UPF3A-211ENST00000618700 STRA6Q9BX79 667 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 TMEM134Q9H6X4 195 aa21.72■■□□□ 1.07
UPF3A-211ENST00000618700 K7ENM7 598 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms