RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 NHLH1Q02575 133 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 LETM2Q2VYF4 491 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 PLA2G4FQ68DD2 849 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 TWF2Q6IBS0 349 aaKnown RBP21.22■□□□□ 0.99
CDX1-202ENST00000616154 PPP4R3AQ6IN85 833 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 CASP10Q92851 521 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 FAM20AQ96MK3 541 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 LIMCH1Q9UPQ0 1083 aa21.22■□□□□ 0.99
CDX1-202ENST00000616154 PIN4Q9Y237 131 aaKnown RBP21.22■□□□□ 0.99
CDX1-202ENST00000616154 CCDC194A0A1B0GVG4 234 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 CARNS1A5YM72 827 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 DKC1O60832 514 aaKnown RBP eCLIP21.21■□□□□ 0.99
CDX1-202ENST00000616154 GCFC2P16383 781 aaKnown RBP21.21■□□□□ 0.99
CDX1-202ENST00000616154 QARSP47897 775 aaKnown RBP21.21■□□□□ 0.99
CDX1-202ENST00000616154 NEK8Q86SG6 692 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 KSR1Q8IVT5 923 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 OXER1Q8TDS5 423 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 TMEM169Q96HH4 297 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 NLRP4Q96MN2 994 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 CYP26B1Q9NR63 512 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 FAM105AQ9NUU6 356 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 HCFC2Q9Y5Z7 792 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 KMT2EQ8IZD2 1858 aa21.21■□□□□ 0.99
CDX1-202ENST00000616154 ZNF623O75123 536 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 RAB27AP51159 221 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 GLB1LQ6UWU2 654 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 CATSPER4Q7RTX7 472 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 ALYREFQ86V81 257 aaKnown RBP21.2■□□□□ 0.98
CDX1-202ENST00000616154 LPPQ93052 612 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 APOL5Q9BWW9 433 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 PPME1Q9Y570 386 aa21.2■□□□□ 0.98
CDX1-202ENST00000616154 NT5C1B-RDH14C9J2C7 533 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 JAK2O60674 1132 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 CLASP2O75122 1294 aaKnown RBP21.19■□□□□ 0.98
CDX1-202ENST00000616154 ZC3H11AO75152 810 aaKnown RBP eCLIP21.19■□□□□ 0.98
CDX1-202ENST00000616154 SIGLEC14Q08ET2 396 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 BMS1Q14692 1282 aaKnown RBP21.19■□□□□ 0.98
CDX1-202ENST00000616154 TPRNQ4KMQ1 711 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 SLC7A3Q8WY07 619 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 PBXIP1Q96AQ6 731 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 NAP1L4Q99733 375 aaKnown RBP21.19■□□□□ 0.98
CDX1-202ENST00000616154 LLPHQ9BRT6 129 aaKnown RBP21.19■□□□□ 0.98
CDX1-202ENST00000616154 ZBP1Q9H171 429 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 IFT122Q9HBG6 1241 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 AGPAT5Q9NUQ2 364 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 TBC1D13Q9NVG8 400 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 COL4A3BPQ9Y5P4 624 aa21.19■□□□□ 0.98
CDX1-202ENST00000616154 TBX3O15119 743 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 DTNBO60941 627 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 P4HBP07237 508 aaKnown RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 POLGP54098 1239 aaPredicted RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 NPEPPSP55786 919 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 PTPN21Q16825 1174 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 NOMO2Q5JPE7 1267 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 EARS2Q5JPH6 523 aaKnown RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 TMEM173Q86WV6 379 aaPredicted RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 EXOC8Q8IYI6 725 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 HAS1Q92839 578 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 NECTIN4Q96NY8 510 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 ADAM7Q9H2U9 754 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 DHX33Q9H6R0 707 aaKnown RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 NRDE2Q9H7Z3 1164 aa21.18■□□□□ 0.98
CDX1-202ENST00000616154 WRAP73Q9P2S5 460 aaPredicted RBP21.18■□□□□ 0.98
CDX1-202ENST00000616154 MEIS3P2A8K0S8 358 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 OFD1O75665 1012 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 CXCL14O95715 111 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 KRT2P35908 639 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 RFC5P40937 340 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 ITIH3Q06033 890 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 CES5AQ6NT32 575 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 PIK3AP1Q6ZUJ8 805 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 DDX53Q86TM3 631 aaKnown RBP21.17■□□□□ 0.98
CDX1-202ENST00000616154 VPS52Q8N1B4 723 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 ZNF579Q8NAF0 562 aaKnown RBP21.17■□□□□ 0.98
CDX1-202ENST00000616154 PGBD4Q96DM1 585 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 IGSF21Q96ID5 467 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 CEP170P1Q96L14 293 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 SH2B1Q9NRF2 756 aaPredicted RBP21.17■□□□□ 0.98
CDX1-202ENST00000616154 INPP5FQ9Y2H2 1132 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 IRAK3Q9Y616 596 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 MYO10Q9HD67 2058 aa21.17■□□□□ 0.98
CDX1-202ENST00000616154 CCNT1O60563 726 aaKnown RBP21.16■□□□□ 0.98
CDX1-202ENST00000616154 GALTP07902 379 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 CTSAP10619 480 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 NR5A1Q13285 461 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 GIT2Q14161 759 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 EPHA7Q15375 998 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 LONRF3Q496Y0 759 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 SRGAP1Q7Z6B7 1085 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 SUGP1Q8IWZ8 645 aaKnown RBP21.16■□□□□ 0.98
CDX1-202ENST00000616154 C4orf19Q8IY42 314 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 FBXL6Q8N531 539 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 PRPF31Q8WWY3 499 aaKnown RBP21.16■□□□□ 0.98
CDX1-202ENST00000616154 PSPC1Q8WXF1 523 aaKnown RBP21.16■□□□□ 0.98
CDX1-202ENST00000616154 ZSCAN31Q96LW9 406 aaPredicted RBP21.16■□□□□ 0.98
CDX1-202ENST00000616154 LXNQ9BS40 222 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 BRMS1Q9HCU9 246 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 DZANK1Q9NVP4 752 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 CDH22Q9UJ99 828 aa21.16■□□□□ 0.98
CDX1-202ENST00000616154 NR2E1Q9Y466 385 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms