RNA–Protein interactions for RNA: ENST00000616074.4

TRAPPC3-208, Transcript of trafficking protein particle complex 3, humanhuman

TSL 5 BASIC

Gene TRAPPC3, Length 1,114 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-208ENST00000616074 HAS1Q92839 578 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 CASP10Q92851 521 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 TMEM169Q96HH4 297 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 IFT122Q9HBG6 1241 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 CDH22Q9UJ99 828 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 COL4A3BPQ9Y5P4 624 aa23.27■■□□□ 1.32
TRAPPC3-208ENST00000616074 PFKFB2O60825 505 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 CLASP2O75122 1294 aaKnown RBP23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 P4HBP07237 508 aaKnown RBP23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 XBP1P17861 261 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 RAB27AP51159 221 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 EARS2Q5JPH6 523 aaKnown RBP23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 ALYREFQ86V81 257 aaKnown RBP23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 SLC7A3Q8WY07 619 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 RSPH1Q8WYR4 309 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 CEP170P1Q96L14 293 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 ZBP1Q9H171 429 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 NRDE2Q9H7Z3 1164 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 TBC1D13Q9NVG8 400 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 INPP5FQ9Y2H2 1132 aa23.26■■□□□ 1.31
TRAPPC3-208ENST00000616074 DKC1O60832 514 aaKnown RBP eCLIP23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 ZNF623O75123 536 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 OFD1O75665 1012 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 CTDNEP1O95476 244 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 SP100P23497 879 aaPredicted RBP23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 POLGP54098 1239 aaPredicted RBP23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 NOMO2Q5JPE7 1267 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 GLB1LQ6UWU2 654 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 POTEDQ86YR6 584 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 VPS52Q8N1B4 723 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 TMEM143Q96AN5 459 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 PBXIP1Q96AQ6 731 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 LXNQ9BS40 222 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 DHX33Q9H6R0 707 aaKnown RBP23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 BMP2KQ9NSY1 1161 aaPredicted RBP23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 AGPAT5Q9NUQ2 364 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 KMT2EQ8IZD2 1858 aa23.25■■□□□ 1.31
TRAPPC3-208ENST00000616074 TBX3O15119 743 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 CXCL14O95715 111 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 EPHA7Q15375 998 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 BCL7CQ8WUZ0 217 aaPredicted RBP23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 AUTS2Q8WXX7 1259 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 IGSF21Q96ID5 467 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 MINDY3Q9H8M7 445 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 PPME1Q9Y570 386 aa23.24■■□□□ 1.31
TRAPPC3-208ENST00000616074 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 FAM205CA6NFA0 338 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 GALTP07902 379 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 YWHABP31946 246 aaKnown RBP23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 RFC5P40937 340 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 SPIRE1Q08AE8 756 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 SIGLEC14Q08ET2 396 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 TPRNQ4KMQ1 711 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 NCAPH2Q6IBW4 605 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 C4orf19Q8IY42 314 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 PRPF31Q8WWY3 499 aaKnown RBP23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 PSPC1Q8WXF1 523 aaKnown RBP23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 NAP1L4Q99733 375 aaKnown RBP23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 GBP3Q9H0R5 595 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 RGL1Q9NZL6 768 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 DNAJB4Q9UDY4 337 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 PCDHB2Q9Y5E7 798 aa23.23■■□□□ 1.31
TRAPPC3-208ENST00000616074 MARCH6O60337 910 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 B4GALT3O60512 393 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 SRGAP2CP0DJJ0 459 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 RNASELQ05823 741 aaKnown RBP23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 LAMTOR4Q0VGL1 99 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 BMS1Q14692 1282 aaKnown RBP23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 PTPN21Q16825 1174 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 AGMOQ6ZNB7 445 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 SRGAP1Q7Z6B7 1085 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 DDX53Q86TM3 631 aaKnown RBP23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 EXOC8Q8IYI6 725 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 PGBD4Q96DM1 585 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 DYDC2Q96IM9 177 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 ADAM7Q9H2U9 754 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 POMKQ9H5K3 350 aa23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 ORC3Q9UBD5 711 aaPredicted RBP23.22■■□□□ 1.31
TRAPPC3-208ENST00000616074 CARNS1A5YM72 827 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 ZBTB39O15060 712 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 CTSAP10619 480 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 SLC11A1P49279 550 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 AK2P54819 239 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 CYP4A11Q02928 519 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 ITIH3Q06033 890 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 NR5A1Q13285 461 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 CTTNQ14247 550 aaKnown RBP23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 EMC2Q15006 297 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 CES5AQ6NT32 575 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 ZNF280BQ86YH2 543 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 ASIC4Q96FT7 647 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 VN1R3Q9BXE9 311 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 TSHZ2Q9NRE2 1034 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 IRAK3Q9Y616 596 aa23.21■■□□□ 1.31
TRAPPC3-208ENST00000616074 FDPSP14324 419 aaKnown RBP23.2■■□□□ 1.3
TRAPPC3-208ENST00000616074 HOXA11P31270 313 aaPredicted RBP23.2■■□□□ 1.3
TRAPPC3-208ENST00000616074 MRE11P49959 708 aa23.2■■□□□ 1.3
TRAPPC3-208ENST00000616074 AFF1P51825 1210 aaKnown RBP23.2■■□□□ 1.3
TRAPPC3-208ENST00000616074 XKR9Q5GH70 373 aa23.2■■□□□ 1.3
TRAPPC3-208ENST00000616074 UBXN11Q5T124 520 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms