RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 LIN9Q5TKA1 542 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 AGBL2Q5U5Z8 902 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 KAT2BQ92831 832 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 SLC35C1Q96A29 364 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 MIF4GDA9UHW6 222 aaKnown RBP13.49□□□□□ -0.25
MSH6-213ENST00000614496 HSPA6P17066 643 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 ALDH3A1P30838 453 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 DCUN1D2Q6PH85 259 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 EPS8L3Q8TE67 593 aaKnown RBP13.49□□□□□ -0.25
MSH6-213ENST00000614496 SLC20A1Q8WUM9 679 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP13.49□□□□□ -0.25
MSH6-213ENST00000614496 IMPG2Q9BZV3 1241 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 FAM187AA6NFU0 413 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 TMEM253P0C7T8 217 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 ALDH1B1P30837 517 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 CHRNA3P32297 505 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 PCK1P35558 622 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 MYO1EQ12965 1108 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 EPC2Q52LR7 807 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 CNTNAP4Q9C0A0 1308 aa13.49□□□□□ -0.25
MSH6-213ENST00000614496 MYH15Q9Y2K3 1946 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 HNRNPDLO14979 420 aaKnown RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 CLDN3O15551 220 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 SHOX2O60902 331 aaPredicted RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 PPP1R11O60927 126 aaPredicted RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 EIF2AK2P19525 551 aaKnown RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 NSFP46459 744 aaKnown RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 ITGB3BPQ13352 177 aaPredicted RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 SHROOM1Q2M3G4 852 aaPredicted RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 NBPF9Q3BBW0 867 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 PASD1Q8IV76 773 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 LRRC34Q8IZ02 419 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 XXYLT1Q8NBI6 393 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 BCAS3Q9H6U6 928 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 C1orf112Q9NSG2 853 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 AGTPBP1Q9UPW5 1226 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 TCP11X1B4DZS4 312 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 FAM86B1E9PN63 330 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 F8VZ95 297 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 FAM86B2P0C5J1 330 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 IRF2BP2Q7Z5L9 587 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 TMC3Q7Z5M5 1100 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 NT5DC3Q86UY8 548 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 ZFPM1Q8IX07 1006 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 ARHGEF26Q96DR7 871 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 SEMA4AQ9H3S1 761 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 SPATA31A5Q5VU36 1347 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 SPATA31A7Q8IWB4 1347 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 MYO5AQ9Y4I1 1855 aaKnown RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 C4AP0C0L4 1744 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 C4BP0C0L5 1744 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 SLC16A3O15427 465 aaKnown RBP13.48□□□□□ -0.25
MSH6-213ENST00000614496 HAUS1Q96CS2 278 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 NEUROG2Q9H2A3 272 aa13.48□□□□□ -0.25
MSH6-213ENST00000614496 IPO5O00410 1097 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 BRAFP15056 766 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 SHMT1P34896 483 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 BFSP1Q12934 665 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 EPHA7Q15375 998 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 RC3H1Q5TC82 1133 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 CYB5D1Q6P9G0 228 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 CXorf56Q9H5V9 222 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 VCPKMTQ9H867 229 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 TAS2R14Q9NYV8 317 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 TTC7AQ9ULT0 858 aaPredicted RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 DIS3Q9Y2L1 958 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 WDR91A4D1P6 747 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 EML1O00423 815 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 PPIP5K2O43314 1243 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 GBP1P32455 592 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 PEX19P40855 299 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 DHX34Q14147 1143 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 C2CD6Q53TS8 623 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 ARHGAP27Q6ZUM4 889 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 KIF2BQ8N4N8 673 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 RBM46Q8TBY0 533 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 IQCGQ9H095 443 aaKnown RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 KCTD10Q9H3F6 313 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 TMEM206Q9H813 350 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 MYH7P12883 1935 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 AKAP11Q9UKA4 1901 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 DUOX1Q9NRD9 1551 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 GRIN2DO15399 1336 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 SLC12A3P55017 1021 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 IFI35P80217 286 aaPredicted RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 DLGAP5Q15398 846 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 ARSHQ5FYA8 562 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 LMBRD2Q68DH5 695 aaPredicted RBP13.47□□□□□ -0.25
MSH6-213ENST00000614496 BARGINQ6ZT62 677 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 KIRREL3Q8IZU9 778 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 AGPAT3Q9NRZ7 376 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 CASZ1Q86V15 1759 aa13.47□□□□□ -0.25
MSH6-213ENST00000614496 DCDC2CA8MYV0 355 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 PHF2O75151 1096 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 LCA5LO95447 670 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 SESN3P58005 492 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 ZNF449Q6P9G9 518 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 FGFR1OP2Q9NVK5 253 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 PRR12Q9ULL5 1215 aa13.46□□□□□ -0.25
MSH6-213ENST00000614496 SHBGP04278 402 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms