RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 TMEM143Q96AN5 459 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 NLRP4Q96MN2 994 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 S1PR5Q9H228 398 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 DHX33Q9H6R0 707 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 ENTPD7Q9NQZ7 604 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 FAM105AQ9NUU6 356 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 MUTYHQ9UIF7 546 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 PIN4Q9Y237 131 aaKnown RBP8.53□□□□□ -1.04
CUX1-219ENST00000606749 PPME1Q9Y570 386 aa8.53□□□□□ -1.04
CUX1-219ENST00000606749 C2orf71A6NGG8 1288 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 MEIS3P2A8K0S8 358 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 BTBD18B2RXH4 712 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 NT5C1B-RDH14C9J2C7 533 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 ASAP2O43150 1006 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 SLITRK3O94933 977 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 LARGE1O95461 756 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 CXCL14O95715 111 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 HOXA11P31270 313 aaPredicted RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 YWHABP31946 246 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 KRT2P35908 639 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 RFC5P40937 340 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 TECP42680 631 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 NEK4P51957 841 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 POLGP54098 1239 aaPredicted RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 LAMTOR4Q0VGL1 99 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 CTTNQ14247 550 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 CBX2Q14781 532 aaPredicted RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 ERICH6BQ5W0A0 696 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 NCAPH2Q6IBW4 605 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 ANKRD54Q6NXT1 300 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 SYCE2Q6PIF2 218 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 CATSPER4Q7RTX7 472 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 SRGAP1Q7Z6B7 1085 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 MRPL10Q7Z7H8 261 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 TPH2Q8IWU9 490 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 NSUN7Q8NE18 718 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 PSPC1Q8WXF1 523 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 RSPH1Q8WYR4 309 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 GTF3C6Q969F1 213 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 DYDC2Q96IM9 177 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 HSD17B14Q9BPX1 270 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 LXNQ9BS40 222 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 PHF7Q9BWX1 381 aaPredicted RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 MRPL9Q9BYD2 267 aaKnown RBP8.52□□□□□ -1.05
CUX1-219ENST00000606749 ZSWIM4Q9H7M6 989 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 NRDE2Q9H7Z3 1164 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 MINDY3Q9H8M7 445 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 AGPAT5Q9NUQ2 364 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 PCDHA12Q9UN75 941 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 COL4A3BPQ9Y5P4 624 aa8.52□□□□□ -1.05
CUX1-219ENST00000606749 GAS2O43903 313 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 JAK2O60674 1132 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 CLASP2O75122 1294 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 ZC3H11AO75152 810 aaKnown RBP eCLIP8.51□□□□□ -1.051e-7■■■□□ 17.7
CUX1-219ENST00000606749 SEC24BO95487 1268 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 GALTP07902 379 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 SRGAP2BP0DMP2 458 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 HOXB8P17481 243 aaPredicted RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 RAB27AP51159 221 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 CYP4A11Q02928 519 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 SMC1AQ14683 1233 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 BMS1Q14692 1282 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 XKR9Q5GH70 373 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 NOMO2Q5JPE7 1267 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 LLGL2Q6P1M3 1020 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 GLB1LQ6UWU2 654 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 AGMOQ6ZNB7 445 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 DDX53Q86TM3 631 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 FERMT3Q86UX7 667 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 TMEM173Q86WV6 379 aaPredicted RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 VPS52Q8N1B4 723 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 RNF149Q8NC42 400 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 TCP11Q8WWU5 503 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 EDAQ92838 391 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 PGBD4Q96DM1 585 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 RPGRIP1Q96KN7 1286 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 EIF2AK1Q9BQI3 630 aaKnown RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 APOL5Q9BWW9 433 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 TTC12Q9H892 705 aaPredicted RBP8.51□□□□□ -1.05
CUX1-219ENST00000606749 BRMS1Q9HCU9 246 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 TBC1D13Q9NVG8 400 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 PCDHB2Q9Y5E7 798 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 TRIOO75962 3097 aa8.51□□□□□ -1.05
CUX1-219ENST00000606749 CARNS1A5YM72 827 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 WNT7AO00755 349 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 DDHD2O94830 711 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 LYPLA2O95372 231 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 TXKP42681 527 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 AFF1P51825 1210 aaKnown RBP8.5□□□□□ -1.05
CUX1-219ENST00000606749 ZXDAP98168 799 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 RNASELQ05823 741 aaKnown RBP8.5□□□□□ -1.05
CUX1-219ENST00000606749 POU5F1BQ06416 359 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 MXD4Q14582 209 aaPredicted RBP8.5□□□□□ -1.05
CUX1-219ENST00000606749 EMC2Q15006 297 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 CALCRLQ16602 461 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 UBXN11Q5T124 520 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 HFE2Q6ZVN8 426 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 ZNF280BQ86YH2 543 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 CASP10Q92851 521 aa8.5□□□□□ -1.05
CUX1-219ENST00000606749 TMEM169Q96HH4 297 aa8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms