RNA–Protein interactions for RNA: ENST00000601849.1

VRK3-224, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 653 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-224ENST00000601849 ZNF623O75123 536 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 MAFO75444 373 aaPredicted RBP10.74□□□□□ -0.69
VRK3-224ENST00000601849 NR1I2O75469 434 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 PSMD10O75832 226 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 CTSAP10619 480 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 CYP3A7P24462 503 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 KLRC2P26717 231 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 PDIA3P30101 505 aaKnown RBP10.74□□□□□ -0.69
VRK3-224ENST00000601849 QARSP47897 775 aaKnown RBP10.74□□□□□ -0.69
VRK3-224ENST00000601849 TCF15Q12870 199 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 NONOQ15233 471 aaKnown RBP eCLIP10.74□□□□□ -0.69
VRK3-224ENST00000601849 RARS2Q5T160 578 aaKnown RBP10.74□□□□□ -0.69
VRK3-224ENST00000601849 KIAA1841Q6NSI8 718 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 MOXD1Q6UVY6 613 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 BLIDQ8IZY5 108 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 CNNM3Q8NE01 707 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 TCP11Q8WWU5 503 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 KCNB2Q92953 911 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 IGSF21Q96ID5 467 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 NLRP4Q96MN2 994 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 GBP3Q9H0R5 595 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 POMKQ9H5K3 350 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 CYP26B1Q9NR63 512 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 RNF19AQ9NV58 838 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 DDX25Q9UHL0 483 aaKnown RBP10.74□□□□□ -0.69
VRK3-224ENST00000601849 INPP5FQ9Y2H2 1132 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 FAN1Q9Y2M0 1017 aa10.74□□□□□ -0.69
VRK3-224ENST00000601849 IGKV6-21A0A0C4DH24 114 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 C2CD4DB7Z1M9 353 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 GALR2O43603 387 aaPredicted RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 GAS2O43903 313 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 CSDE1O75534 798 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 CDKL5O76039 1030 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 BAG4O95429 457 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 P4HBP07237 508 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 GALTP07902 379 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 VCPP55072 806 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 NTRK3Q16288 839 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 UGCGQ16739 394 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 RUFY3Q7L099 469 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 OTOP3Q7RTS5 596 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 KRT25Q7Z3Z0 450 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 SRGAP1Q7Z6B7 1085 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 HACE1Q8IYU2 909 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 PSPC1Q8WXF1 523 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 ZNF274Q96GC6 653 aaPredicted RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 CEP170P1Q96L14 293 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 FAM20AQ96MK3 541 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 AGXT2Q9BYV1 514 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 ZBP1Q9H171 429 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 SFXN1Q9H9B4 322 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 MRPL17Q9NRX2 175 aaKnown RBP10.73□□□□□ -0.69
VRK3-224ENST00000601849 LIMD1Q9UGP4 676 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 CYP46A1Q9Y6A2 500 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 CNTNAP2Q9UHC6 1331 aa10.73□□□□□ -0.69
VRK3-224ENST00000601849 CCDC194A0A1B0GVG4 234 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 H0Y858 1186 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 EPB41L2O43491 1005 aaKnown RBP10.72□□□□□ -0.69
VRK3-224ENST00000601849 OFD1O75665 1012 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 ERLIN2O94905 339 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 SRGAP2CP0DJJ0 459 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 RFC5P40937 340 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 CLCN5P51795 746 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 EVCP57679 992 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 PCBP1Q15365 356 aaKnown RBP eCLIP10.72□□□□□ -0.69
VRK3-224ENST00000601849 LETM2Q2VYF4 491 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 LONRF3Q496Y0 759 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 ASTLQ6HA08 431 aaPredicted RBP10.72□□□□□ -0.69
VRK3-224ENST00000601849 TMC5Q6UXY8 1006 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 CCDC149Q6ZUS6 474 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 STAMQ92783 540 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 LPPQ93052 612 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 PHOX2BQ99453 314 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 TMEM175Q9BSA9 504 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 NRDE2Q9H7Z3 1164 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 TBC1D13Q9NVG8 400 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 PCDHB2Q9Y5E7 798 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 COL4A3BPQ9Y5P4 624 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 MYO15AQ9UKN7 3530 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 TECTAO75443 2155 aa10.72□□□□□ -0.69
VRK3-224ENST00000601849 STK25O00506 426 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 ADAMTS3O15072 1205 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 TDP2O95551 362 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 BRD1O95696 1058 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 URODP06132 367 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 GCFC2P16383 781 aaKnown RBP10.71□□□□□ -0.69
VRK3-224ENST00000601849 EPCAMP16422 314 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 RFX1P22670 979 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 DRP2Q13474 957 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 TDGQ13569 410 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 CYP26C1Q6V0L0 522 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 C15orf39Q6ZRI6 1047 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 ANO5Q75V66 913 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 GPR149Q86SP6 731 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 C12orf76Q8N812 135 aaPredicted RBP10.71□□□□□ -0.69
VRK3-224ENST00000601849 SLC22A17Q8WUG5 538 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 PRPF31Q8WWY3 499 aaKnown RBP10.71□□□□□ -0.69
VRK3-224ENST00000601849 AUTS2Q8WXX7 1259 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 GJA10Q969M2 543 aa10.71□□□□□ -0.69
VRK3-224ENST00000601849 CCDC43Q96MW1 224 aaKnown RBP10.71□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms