RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 MICAL1Q8TDZ2 1067 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 PIGOQ8TEQ8 1089 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 RSPH1Q8WYR4 309 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 MINDY3Q9H8M7 445 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 TUFT1Q9NNX1 390 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 KIF3AQ9Y496 699 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 NCOR1O75376 2440 aa29.01■■■□□ 2.23
PNKP-216ENST00000601816 XRCC6P12956 609 aaKnown RBP eCLIP29■■■□□ 2.23
PNKP-216ENST00000601816 IL9P15248 144 aa29■■■□□ 2.23
PNKP-216ENST00000601816 LTBRP36941 435 aa29■■■□□ 2.23
PNKP-216ENST00000601816 TECP42680 631 aa29■■■□□ 2.23
PNKP-216ENST00000601816 PUF60Q9UHX1 559 aaKnown RBP29■■■□□ 2.23
PNKP-216ENST00000601816 FAM50BQ9Y247 325 aa29■■■□□ 2.23
PNKP-216ENST00000601816 LZTS1Q9Y250 596 aa29■■■□□ 2.23
PNKP-216ENST00000601816 PCDHGC5Q9Y5F6 944 aa29■■■□□ 2.23
PNKP-216ENST00000601816 SPATA31C1P0DKV0 1188 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 PLCB3Q01970 1234 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 TFDP1Q14186 410 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 GLB1LQ6UWU2 654 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 ERMNQ8TAM6 284 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 MRPS27Q92552 414 aaKnown RBP28.99■■■□□ 2.23
PNKP-216ENST00000601816 LPPQ93052 612 aa28.99■■■□□ 2.23
PNKP-216ENST00000601816 A0A087WWV3 80 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 LINC01565O15544 149 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 ZNF623O75123 536 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 PBX3P40426 434 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 NRIP1P48552 1158 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 DLX2Q07687 328 aaPredicted RBP28.98■■■□□ 2.23
PNKP-216ENST00000601816 ADAM15Q13444 863 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 LONRF3Q496Y0 759 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 PDE12Q6L8Q7 609 aaKnown RBP28.98■■■□□ 2.23
PNKP-216ENST00000601816 CATSPER3Q86XQ3 398 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 EFHBQ8N7U6 833 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 PGBD4Q96DM1 585 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 SPG21Q9NZD8 308 aa28.98■■■□□ 2.23
PNKP-216ENST00000601816 USO1O60763 962 aaKnown RBP28.97■■■□□ 2.23
PNKP-216ENST00000601816 TBX10O75333 385 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 MED24O75448 989 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 ERLIN2O94905 339 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 U2AF2P26368 475 aaKnown RBP eCLIP28.97■■■□□ 2.234e-8■□□□□ 9.6
PNKP-216ENST00000601816 NDUFV1P49821 464 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 PTENP60484 403 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 ERVFC1P60507 584 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 KRT17Q04695 432 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 RBM23Q86U06 439 aaKnown RBP28.97■■■□□ 2.23
PNKP-216ENST00000601816 FAM178BQ8IXR5 827 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 POLR3CQ9BUI4 534 aaPredicted RBP28.97■■■□□ 2.23
PNKP-216ENST00000601816 TLE6Q9H808 572 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 PCDHB2Q9Y5E7 798 aa28.97■■■□□ 2.23
PNKP-216ENST00000601816 HOXA11P31270 313 aaPredicted RBP28.96■■■□□ 2.23
PNKP-216ENST00000601816 ARL2P36404 184 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 NBR1Q14596 966 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 PCBP1Q15365 356 aaKnown RBP eCLIP28.96■■■□□ 2.23
PNKP-216ENST00000601816 CLUL1Q15846 466 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 ASAP3Q8TDY4 903 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 TMX3Q96JJ7 454 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 NACC1Q96RE7 527 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 INPP5FQ9Y2H2 1132 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 BDP1A6H8Y1 2624 aa28.96■■■□□ 2.23
PNKP-216ENST00000601816 FSCN2O14926 492 aa28.95■■■□□ 2.22
PNKP-216ENST00000601816 POU5F1BQ06416 359 aa28.95■■■□□ 2.22
PNKP-216ENST00000601816 CAPSQ13938 189 aa28.95■■■□□ 2.22
PNKP-216ENST00000601816 NOMO2Q5JPE7 1267 aa28.95■■■□□ 2.22
PNKP-216ENST00000601816 IFNLR1Q8IU57 520 aaPredicted RBP28.95■■■□□ 2.22
PNKP-216ENST00000601816 SLC39A11Q8N1S5 342 aa28.95■■■□□ 2.22
PNKP-216ENST00000601816 POLR3FQ9H1D9 316 aaPredicted RBP28.95■■■□□ 2.22
PNKP-216ENST00000601816 DBR1Q9UK59 544 aaKnown RBP28.95■■■□□ 2.22
PNKP-216ENST00000601816 MEIS3P2A8K0S8 358 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 INO80B-WBP1J3KQ70 363 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 GLRA2P23416 452 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 RPA1P27694 616 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 ALDH7A1P49419 539 aaKnown RBP28.94■■■□□ 2.22
PNKP-216ENST00000601816 BCAR1P56945 870 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 PLPP4Q5VZY2 271 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 HAUS3Q68CZ6 603 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 POTEGQ6S5H5 508 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 TCF25Q9BQ70 676 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 ENTPD7Q9NQZ7 604 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 CD207Q9UJ71 328 aa28.94■■■□□ 2.22
PNKP-216ENST00000601816 FSD2A1L4K1 749 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 TSPAN1O60635 241 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 OFD1O75665 1012 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 CD2BP2O95400 341 aaKnown RBP28.93■■■□□ 2.22
PNKP-216ENST00000601816 AXLP30530 894 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 MCM2P49736 904 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 FXR2P51116 673 aaKnown RBP eCLIP28.93■■■□□ 2.22
PNKP-216ENST00000601816 NCBP1Q09161 790 aaKnown RBP28.93■■■□□ 2.22
PNKP-216ENST00000601816 UBXN11Q5T124 520 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 MRPL10Q7Z7H8 261 aaKnown RBP28.93■■■□□ 2.22
PNKP-216ENST00000601816 C4orf32Q8N8J7 132 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 MCPH1Q8NEM0 835 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 TBC1D32Q96NH3 1257 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 TBC1D13Q9NVG8 400 aa28.93■■■□□ 2.22
PNKP-216ENST00000601816 PER2O15055 1255 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 ZC3H11AO75152 810 aaKnown RBP eCLIP28.92■■■□□ 2.22
PNKP-216ENST00000601816 TOB1P50616 345 aaPredicted RBP28.92■■■□□ 2.22
PNKP-216ENST00000601816 RNASELQ05823 741 aaKnown RBP28.92■■■□□ 2.22
PNKP-216ENST00000601816 MBTD1Q05BQ5 628 aa28.92■■■□□ 2.22
PNKP-216ENST00000601816 SMAD4Q13485 552 aaKnown RBP28.92■■■□□ 2.22
PNKP-216ENST00000601816 MAEAQ7L5Y9 396 aa28.92■■■□□ 2.22
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms