RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 DDX19AQ9NUU7 478 aaKnown RBP17.97■□□□□ 0.47
LSM4-206ENST00000600289 TMEM161AQ9NX61 479 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 KIAA1024Q9UPX6 916 aa17.97■□□□□ 0.47
LSM4-206ENST00000600289 C5orf42Q9H799 3197 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 ARHGEF35A5YM69 484 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 USO1O60763 962 aaKnown RBP17.96■□□□□ 0.47
LSM4-206ENST00000600289 EYA4O95677 639 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 ZSCAN20P17040 1043 aaPredicted RBP17.96■□□□□ 0.47
LSM4-206ENST00000600289 CYP11B2P19099 503 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 LONP1P36776 959 aaKnown RBP17.96■□□□□ 0.47
LSM4-206ENST00000600289 PHKA2P46019 1235 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 PTENP60484 403 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 PADI6Q6TGC4 694 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 CMTR2Q8IYT2 770 aaKnown RBP17.96■□□□□ 0.47
LSM4-206ENST00000600289 NT5C3AQ9H0P0 336 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 AGPAT5Q9NUQ2 364 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 DACT1Q9NYF0 836 aa17.96■□□□□ 0.47
LSM4-206ENST00000600289 ZDBF2Q9HCK1 2354 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 A0A087WWV3 80 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 HSP90AA1P07900 732 aaKnown RBP17.95■□□□□ 0.46
LSM4-206ENST00000600289 LINC00271P0C7V0 271 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 GLRA2P23416 452 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 CAPSQ13938 189 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 FAM178BQ8IXR5 827 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 FIBCD1Q8N539 461 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 RNF149Q8NC42 400 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 ASAP3Q8TDY4 903 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 CLP1Q92989 425 aaKnown RBP17.95■□□□□ 0.46
LSM4-206ENST00000600289 POLR3FQ9H1D9 316 aaPredicted RBP17.95■□□□□ 0.46
LSM4-206ENST00000600289 BHMT2Q9H2M3 363 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 LRFN2Q9ULH4 789 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 DNM3Q9UQ16 869 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 RWDD3Q9Y3V2 267 aa17.95■□□□□ 0.46
LSM4-206ENST00000600289 A0A0U1RQF3 1178 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 SRGAP2CP0DJJ0 459 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 FGFR4P22455 802 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 CDC25AP30304 524 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 TMEM119Q4V9L6 283 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 CATSPER4Q7RTX7 472 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 SPRED2Q7Z698 418 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 GJD3Q8N144 294 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 ARNTL2Q8WYA1 636 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 RSPH1Q8WYR4 309 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 PNMA5Q96PV4 448 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 MINDY3Q9H8M7 445 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 PCDHB7Q9Y5E2 793 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 CLIC4Q9Y696 253 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 PLXNA4Q9HCM2 1894 aa17.94■□□□□ 0.46
LSM4-206ENST00000600289 C5orf67F2Z3F1 127 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 HOXA2O43364 376 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 LPXNO60711 386 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 CSDE1O75534 798 aaKnown RBP17.93■□□□□ 0.46
LSM4-206ENST00000600289 EOMESO95936 686 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 SKIP12755 728 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 NASPP49321 788 aaPredicted RBP17.93■□□□□ 0.46
LSM4-206ENST00000600289 RAB27AP51159 221 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 MBTD1Q05BQ5 628 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 GRB10Q13322 594 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 CDCA2Q69YH5 1023 aaPredicted RBP17.93■□□□□ 0.46
LSM4-206ENST00000600289 ZNF598Q86UK7 904 aaKnown RBP17.93■□□□□ 0.46
LSM4-206ENST00000600289 CABP7Q86V35 215 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 ECHDC2Q86YB7 292 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 TIPINQ9BVW5 301 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 LMCD1Q9NZU5 365 aa17.93■□□□□ 0.46
LSM4-206ENST00000600289 PIN4Q9Y237 131 aaKnown RBP17.93■□□□□ 0.46
LSM4-206ENST00000600289 E9PMD0 336 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 ZNF623O75123 536 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 RB1P06400 928 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 AXLP30530 894 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 BTG3Q14201 252 aaPredicted RBP17.92■□□□□ 0.46
LSM4-206ENST00000600289 CSPP1Q1MSJ5 1256 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 FAM173BQ6P4H8 233 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 KCNK18Q7Z418 384 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 KIFAP3Q92845 792 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 CCDC51Q96ER9 411 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 USP28Q96RU2 1077 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 C17orf80Q9BSJ5 609 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 GPRC5CQ9NQ84 441 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 KCND2Q9NZV8 630 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 DAXXQ9UER7 740 aaPredicted RBP17.92■□□□□ 0.46
LSM4-206ENST00000600289 FBXO2Q9UK22 296 aaPredicted RBP17.92■□□□□ 0.46
LSM4-206ENST00000600289 SRPRBQ9Y5M8 271 aaKnown RBP17.92■□□□□ 0.46
LSM4-206ENST00000600289 SPTBN4Q9H254 2564 aa17.92■□□□□ 0.46
LSM4-206ENST00000600289 ZSCAN22P10073 491 aaPredicted RBP17.91■□□□□ 0.46
LSM4-206ENST00000600289 ALADP13716 330 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 ATF7P17544 494 aaPredicted RBP17.91■□□□□ 0.46
LSM4-206ENST00000600289 UBA7P41226 1012 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 NAMPTP43490 491 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 GRIN1Q05586 938 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 SLC39A14Q15043 492 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 PPP2R5AQ15172 486 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 AMHR2Q16671 573 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 EPC2Q52LR7 807 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 FAM102BQ5T8I3 360 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 PPP4R3CPQ6ZMV5 832 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 TMEM192Q8IY95 271 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 SYT2Q8N9I0 419 aaPredicted RBP17.91■□□□□ 0.46
LSM4-206ENST00000600289 FBXO22Q8NEZ5 403 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 CDK5RAP3Q96JB5 506 aa17.91■□□□□ 0.46
LSM4-206ENST00000600289 PRIMPOLQ96LW4 560 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms