RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 AOC1P19801 751 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 CYP3A7P24462 503 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 HOXA11P31270 313 aaPredicted RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 CLCN4P51793 760 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 CDC42EP1Q00587 391 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 TDGQ13569 410 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 GIT2Q14161 759 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 NPY5RQ15761 445 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 LONRF3Q496Y0 759 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 XKR3Q5GH77 459 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 NOMO2Q5JPE7 1267 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 UBXN11Q5T124 520 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 TAS1R1Q7RTX1 841 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 SKAP1Q86WV1 359 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 KSR1Q8IVT5 923 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 FBXL16Q8N461 479 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 TDRD5Q8NAT2 981 aaKnown RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 RDM1Q8NG50 284 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 RSPH1Q8WYR4 309 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 CCDC136Q96JN2 1154 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 MBOAT7Q96N66 472 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 SH2D3AQ9BRG2 576 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 MRPL9Q9BYD2 267 aaKnown RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 RHOBTB2Q9BYZ6 727 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 GCOM2Q9BZD3 368 aaPredicted RBP6.89□□□□□ -1.31
VRK3-220ENST00000600259 KCNK12Q9HB15 430 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 IFT122Q9HBG6 1241 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 C6orf50Q9HD87 102 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 FAM105AQ9NUU6 356 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 NID2Q14112 1375 aa6.89□□□□□ -1.31
VRK3-220ENST00000600259 NCOR2Q9Y618 2525 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 KRBA1A5PL33 1030 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 CARNS1A5YM72 827 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 NARSO43776 548 aaKnown RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 GAS7O60861 476 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 ZC3H11AO75152 810 aaKnown RBP eCLIP6.88□□□□□ -1.31
VRK3-220ENST00000600259 IFNAR1P17181 557 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 GNA11P29992 359 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 SFNP31947 248 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 JAK3P52333 1124 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 EVCP57679 992 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 TBC1D8BQ0IIM8 1120 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 Q4G0T1 1027 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 BMP2KLQ5H9B9 411 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 RNF20Q5VTR2 975 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 KIAA0319Q5VV43 1072 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 C15orf39Q6ZRI6 1047 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 Q6ZUG5 572 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 ANO5Q75V66 913 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 OTOP3Q7RTS5 596 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 ERMP1Q7Z2K6 904 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 ZNF410Q86VK4 478 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 PPFIBP1Q86W92 1011 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 CCDC105Q8IYK2 499 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 RNF168Q8IYW5 571 aaPredicted RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 ADSSL1Q8N142 457 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 ZNF579Q8NAF0 562 aaKnown RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 DTWD2Q8NBA8 298 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 CMASQ8NFW8 434 aaPredicted RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 ETNPPLQ8TBG4 499 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 NLRP7Q8WX94 980 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 PHKBQ93100 1093 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 NKD2Q969F2 451 aaPredicted RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 MINDY3Q9H8M7 445 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 RXFP1Q9HBX9 757 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 SUCLA2Q9P2R7 463 aaPredicted RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 DBR1Q9UK59 544 aaKnown RBP6.88□□□□□ -1.31
VRK3-220ENST00000600259 DUSP12Q9UNI6 340 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 SAMM50Q9Y512 469 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 FRYLO94915 3013 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 OTOGLQ3ZCN5 2332 aa6.88□□□□□ -1.31
VRK3-220ENST00000600259 DMXL1Q9Y485 3027 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CEP250Q9BV73 2442 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CCDC196A0A1B0GTZ2 297 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 EML1O00423 815 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 NRP1O14786 923 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 INPPL1O15357 1258 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CHMP2AO43633 222 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 TDP2O95551 362 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 ALDH2P05091 517 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 SKIP12755 728 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 KLRC2P26717 231 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 NPEPPSP55786 919 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 IRX6P78412 446 aaPredicted RBP6.87□□□□□ -1.31
VRK3-220ENST00000600259 BMS1Q14692 1282 aaKnown RBP6.87□□□□□ -1.31
VRK3-220ENST00000600259 ANGPT1Q15389 498 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 LETM2Q2VYF4 491 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 MTERF2Q49AM1 385 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 LRCH2Q5VUJ6 765 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 TWF2Q6IBS0 349 aaKnown RBP6.87□□□□□ -1.31
VRK3-220ENST00000600259 LILRA6Q6PI73 481 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 GLB1LQ6UWU2 654 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CCDC149Q6ZUS6 474 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 MIER3Q7Z3K6 550 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CABP7Q86V35 215 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 SLC44A3Q8N4M1 653 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 SMG8Q8ND04 991 aaKnown RBP6.87□□□□□ -1.31
VRK3-220ENST00000600259 FLCNQ8NFG4 579 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 TBCKQ8TEA7 893 aa6.87□□□□□ -1.31
VRK3-220ENST00000600259 CCDC12Q8WUD4 166 aaPredicted RBP6.87□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms