RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 LMBRD1Q9NUN5 540 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 CREB3O43889 395 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 ORC4O43929 436 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 DGAT1O75907 488 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 CASP14P31944 242 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 GCLCP48506 637 aaPredicted RBP21.81■■□□□ 1.08
UPF1-207ENST00000599848 RBP5P82980 135 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 ART3Q13508 389 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 ARMC6Q6NXE6 501 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 FGFR1OP2Q9NVK5 253 aa21.81■■□□□ 1.08
UPF1-207ENST00000599848 CPDO75976 1380 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 PPP1R12AO14974 1030 aaPredicted RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 DYNC1LI2O43237 492 aaPredicted RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 BARGINQ6ZT62 677 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 ZRANB2O95218 330 aaKnown RBP eCLIP21.8■■□□□ 1.08
UPF1-207ENST00000599848 PRDX5P30044 214 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 HLFQ16534 295 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 ANO4Q32M45 955 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 ANGPTL8Q6UXH0 198 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 BANK1Q8NDB2 785 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 GPR101Q96P66 508 aaPredicted RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 FAM213AQ9BRX8 229 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 TLR7Q9NYK1 1049 aaKnown RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 GADD45BO75293 160 aaPredicted RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 NR3C1P04150 777 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 NAA35Q5VZE5 725 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 PPWD1Q96BP3 646 aaKnown RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 CPSF1Q10570 1443 aaKnown RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 SUPT20HL2P0C7V6 817 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 GSPT1P15170 499 aaKnown RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 CCT5P48643 541 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 PRAMEP78395 509 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 ZNF579Q8NAF0 562 aaKnown RBP21.8■■□□□ 1.08
UPF1-207ENST00000599848 APPL2Q8NEU8 664 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 DYDC2Q96IM9 177 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 DNAJC5Q9H3Z4 198 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 IPPQ9Y573 584 aa21.8■■□□□ 1.08
UPF1-207ENST00000599848 SHROOM2Q13796 1616 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 RALBP11234 206 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 ITGA4P13612 1032 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 MCAMP43121 646 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 THEMIS2Q5TEJ8 643 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 GBP5Q96PP8 586 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 QRICH1Q2TAL8 776 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 LINC00301Q8NCQ3 95 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 RABGGTAQ92696 567 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 RAD54LQ92698 747 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 CELF1Q92879 486 aaKnown RBP21.79■■□□□ 1.08
UPF1-207ENST00000599848 COLEC11Q9BWP8 271 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 RASSF4Q9H2L5 321 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 SYNDIG1Q9H7V2 258 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 EXOC1LA0A1B0GW35 172 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 PRKCBP05771 671 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 GRIK1P39086 918 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 HEATR6Q6AI08 1181 aaKnown RBP21.79■■□□□ 1.08
UPF1-207ENST00000599848 KIFC3Q9BVG8 833 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 PCDHGB4Q9UN71 923 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 DCAF4L1Q3SXM0 396 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 CFAP36Q96G28 342 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 CEP95Q96GE4 821 aa21.79■■□□□ 1.08
UPF1-207ENST00000599848 BAG2O95816 211 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 FAM217BQ9NTX9 383 aaPredicted RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 CNOT8Q9UFF9 292 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 CDC23Q9UJX2 597 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 DNAJC12Q9UKB3 198 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 RCOR1Q9UKL0 485 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 CFAP99D6REC4 459 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 H7C4K7 107 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 TOM1L1O75674 476 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 ATXN8OSP0DMR3 200 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 MAPRE1Q15691 268 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 TCP11X2Q5H9J9 407 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 PCSK9Q8NBP7 692 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 NYAP2Q9P242 653 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 WDR35Q9P2L0 1181 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 PCDHB7Q9Y5E2 793 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 SLC16A4O15374 487 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 KPNA6O60684 536 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 MTMR2Q13614 643 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 DGKDQ16760 1214 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 ALKBH5Q6P6C2 394 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 TMEM270Q6UE05 265 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 OOSP2Q86WS3 158 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 CCDC138Q96M89 665 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 STX18Q9P2W9 335 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 LAMC2Q13753 1193 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 CYP4F22Q6NT55 531 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 EGFL8Q99944 293 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 ISCA1Q9BUE6 129 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 FAM129AQ9BZQ8 928 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 GGA3Q9NZ52 723 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 SELENONQ9NZV5 590 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 AGO2Q9UKV8 859 aaKnown RBP21.78■■□□□ 1.08
UPF1-207ENST00000599848 FLT1P17948 1338 aa21.78■■□□□ 1.08
UPF1-207ENST00000599848 ANP32DO95626 131 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 CYP2B6P20813 491 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 ELF2Q15723 593 aa21.77■■□□□ 1.08
UPF1-207ENST00000599848 ZNF467Q7Z7K2 595 aaPredicted RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 RBAKQ9NYW8 714 aaPredicted RBP21.77■■□□□ 1.08
UPF1-207ENST00000599848 CEP72Q9P209 647 aa21.77■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms