RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.53□□□□□ -0.24
LIG1-217ENST00000599165 HELQQ8TDG4 1101 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 POF1BQ8WVV4 589 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 TCP11Q8WWU5 503 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 BSNDQ8WZ55 320 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 UPF2Q9HAU5 1272 aaKnown RBP13.53□□□□□ -0.24
LIG1-217ENST00000599165 FAM105AQ9NUU6 356 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 DACT1Q9NYF0 836 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 DBR1Q9UK59 544 aaKnown RBP13.53□□□□□ -0.24
LIG1-217ENST00000599165 LINC01565O15544 149 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 ASAP2O43150 1006 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 TSPAN1O60635 241 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 USO1O60763 962 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 FGF18O76093 207 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 KCNA5P22460 613 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 MCM2P49736 904 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 AFF1P51825 1210 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 ERVFC1P60507 584 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 MBTD1Q05BQ5 628 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 LEXMQ3ZCV2 418 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 LONRF3Q496Y0 759 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 AGMOQ6ZNB7 445 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 LRRC43Q8N309 656 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 RNF169Q8NCN4 708 aa13.52□□□□□ -0.25
LIG1-217ENST00000599165 SYMPKQ92797 1274 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 PABPC5Q96DU9 382 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 MMTAG2Q9BU76 263 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 INO80BQ9C086 356 aaPredicted RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 POLR3FQ9H1D9 316 aaPredicted RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 NOL7Q9UMY1 257 aaKnown RBP13.52□□□□□ -0.25
LIG1-217ENST00000599165 TTLL13PA6NNM8 815 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 H3BQ06 376 aaPredicted RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 FSCN2O14926 492 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 B4GALT5O43286 388 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 HOXA2O43364 376 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 TBX10O75333 385 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 OFD1O75665 1012 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 EDN1P05305 212 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 CDC25AP30304 524 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 POU5F1BQ06416 359 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 GNL2Q13823 731 aaKnown RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 MXD4Q14582 209 aaPredicted RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 TWF2Q6IBS0 349 aaKnown RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 KCNT2Q6UVM3 1135 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 KCNK18Q7Z418 384 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 MRPL10Q7Z7H8 261 aaKnown RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 TMEM173Q86WV6 379 aaPredicted RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 SMG8Q8ND04 991 aaKnown RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 NACC1Q96RE7 527 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 UHRF1Q96T88 793 aaPredicted RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 NFKBIZQ9BYH8 718 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 CD320Q9NPF0 282 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 RNF216Q9NWF9 866 aaPredicted RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 PCDHB2Q9Y5E7 798 aa13.51□□□□□ -0.25
LIG1-217ENST00000599165 TDRD15B5MCY1 1934 aaKnown RBP13.51□□□□□ -0.25
LIG1-217ENST00000599165 GLP2RO95838 553 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 IL9P15248 144 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 LAG3P18627 525 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 RBM10P98175 930 aaKnown RBP13.5□□□□□ -0.25
LIG1-217ENST00000599165 ATP2C1P98194 919 aaPredicted RBP13.5□□□□□ -0.25
LIG1-217ENST00000599165 PLCB3Q01970 1234 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 AAK1Q2M2I8 961 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 MAEAQ7L5Y9 396 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 SLC39A11Q8N1S5 342 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 VN1R2Q8NFZ6 395 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 BCL7CQ8WUZ0 217 aaPredicted RBP13.5□□□□□ -0.25
LIG1-217ENST00000599165 CPB2Q96IY4 423 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 EIF2AQ9BY44 585 aaKnown RBP13.5□□□□□ -0.25
LIG1-217ENST00000599165 RNF39Q9H2S5 420 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 TBC1D13Q9NVG8 400 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 LRWD1Q9UFC0 647 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 PCDHB12Q9Y5F1 795 aa13.5□□□□□ -0.25
LIG1-217ENST00000599165 C5orf42Q9H799 3197 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 TNFRSF10AO00220 468 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 ARF4P18085 180 aaPredicted RBP13.49□□□□□ -0.25
LIG1-217ENST00000599165 CYP11B2P19099 503 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 MUTP22033 750 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 CCT6AP40227 531 aaKnown RBP13.49□□□□□ -0.25
LIG1-217ENST00000599165 PRPHP41219 470 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 RAB27AP51159 221 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 UBE3AQ05086 875 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 ADAM15Q13444 863 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 PDIA5Q14554 519 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 RILPL1Q5EBL4 403 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 SPOUT1Q5T280 376 aaKnown RBP13.49□□□□□ -0.25
LIG1-217ENST00000599165 CDCA2Q69YH5 1023 aaPredicted RBP13.49□□□□□ -0.25
LIG1-217ENST00000599165 MCTP1Q6DN14 999 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 PADI6Q6TGC4 694 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 THNSL1Q8IYQ7 743 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 VN1R3Q9BXE9 311 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 NRDE2Q9H7Z3 1164 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 POLD4Q9HCU8 107 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 CLDND1Q9NY35 253 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 CLEC1BQ9P126 229 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 SMC3Q9UQE7 1217 aa13.49□□□□□ -0.25
LIG1-217ENST00000599165 GRXCR2A6NFK2 248 aa13.48□□□□□ -0.25
LIG1-217ENST00000599165 NT5C1B-RDH14C9J2C7 533 aa13.48□□□□□ -0.25
LIG1-217ENST00000599165 E9PMD0 336 aa13.48□□□□□ -0.25
LIG1-217ENST00000599165 INO80B-WBP1J3KQ70 363 aa13.48□□□□□ -0.25
LIG1-217ENST00000599165 LAD1O00515 517 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms