RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 EEF1GP26641 437 aaKnown RBP16.74■□□□□ 0.27
TRIM28-209ENST00000597423 PHKA2P46019 1235 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 CLCN3P51790 818 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 LBX1P52954 281 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 MKRN4PQ13434 485 aaPredicted RBP16.74■□□□□ 0.27
TRIM28-209ENST00000597423 ADAM9Q13443 819 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 NFIL3Q16649 462 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 FILIP1LQ4L180 1135 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 TAF2Q6P1X5 1199 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 FILIP1Q7Z7B0 1213 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 RSPH3Q86UC2 560 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 SESTD1Q86VW0 696 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 RNF149Q8NC42 400 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 MED15Q96RN5 788 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 DUSP9Q99956 384 aaKnown RBP16.74■□□□□ 0.27
TRIM28-209ENST00000597423 NFKBIZQ9BYH8 718 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 UNC93B1Q9H1C4 597 aa16.74■□□□□ 0.27
TRIM28-209ENST00000597423 TRIM49BA6NDI0 452 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 PMS1P54277 932 aaKnown RBP16.73■□□□□ 0.27
TRIM28-209ENST00000597423 CAPSQ13938 189 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 MAPK6Q16659 721 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 ZCWPW2Q504Y3 356 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 FAM47CQ5HY64 1035 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 SLFN12LQ6IEE8 588 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 SARM1Q6SZW1 724 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 ZNF410Q86VK4 478 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 CREBRFQ8IUR6 639 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 KIAA0319LQ8IZA0 1049 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 LINC01465Q8N7H1 131 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 BICD1Q96G01 975 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 TRIM5Q9C035 493 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 INO80BQ9C086 356 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-209ENST00000597423 PAK6Q9NQU5 681 aaPredicted RBP16.73■□□□□ 0.27
TRIM28-209ENST00000597423 SAMSN1Q9NSI8 373 aaKnown RBP16.73■□□□□ 0.27
TRIM28-209ENST00000597423 GTF2IRD1Q9UHL9 959 aa16.73■□□□□ 0.27
TRIM28-209ENST00000597423 NR3C1P04150 777 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 ZNF18P17022 549 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 HOXD13P35453 343 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 PTENP60484 403 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 ADAM17P78536 824 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 NCBP1Q09161 790 aaKnown RBP16.72■□□□□ 0.27
TRIM28-209ENST00000597423 DRP2Q13474 957 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 ITGA7Q13683 1181 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 CDKAL1Q5VV42 579 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 CDCA2Q69YH5 1023 aaPredicted RBP16.72■□□□□ 0.27
TRIM28-209ENST00000597423 MAP4K3Q8IVH8 894 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 TMEM174Q8WUU8 243 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 NLRP7Q8WX94 980 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 NLRP4Q96MN2 994 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 SCLT1Q96NL6 688 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 FRMD4BQ9Y2L6 1034 aa16.72■□□□□ 0.27
TRIM28-209ENST00000597423 KCNJ18B7U540 433 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 DNM1LO00429 736 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 KIAA0391O15091 583 aaKnown RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 TGFB1I1O43294 461 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 PRKCSHP14314 528 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 NR2F2P24468 414 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 HOXC8P31273 242 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 LIG4P49917 911 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 FANCCQ00597 558 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 KCNA1Q09470 495 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 KCNJ12Q14500 433 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 PCBP1Q15365 356 aaKnown RBP eCLIP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 TCP11X2Q5H9J9 407 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 SRGAP1Q7Z6B7 1085 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 IFNLR1Q8IU57 520 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 SLC9A9Q8IVB4 645 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 KSR1Q8IVT5 923 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 C12orf56Q8IXR9 622 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 DEFB118Q96PH6 123 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 KIFC3Q9BVG8 833 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 MRPL4Q9BYD3 311 aaKnown RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 GCOM2Q9BZD3 368 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 FAM49AQ9H0Q0 323 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 METTL14Q9HCE5 456 aaKnown RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 AGPAT3Q9NRZ7 376 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 PRMT7Q9NVM4 692 aaPredicted RBP16.71■□□□□ 0.27
TRIM28-209ENST00000597423 PHF24Q9UPV7 400 aa16.71■□□□□ 0.27
TRIM28-209ENST00000597423 LRRC10BA6NIK2 292 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 INO80B-WBP1J3KQ70 363 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 M0QZ92 97 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 TREHO43280 583 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 TFRCP02786 760 aaKnown RBP16.7■□□□□ 0.26
TRIM28-209ENST00000597423 EPB41P11171 864 aaKnown RBP16.7■□□□□ 0.26
TRIM28-209ENST00000597423 MTIF2P46199 727 aaKnown RBP16.7■□□□□ 0.26
TRIM28-209ENST00000597423 UBASH3AP57075 661 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 NLRP11P59045 1033 aaKnown RBP16.7■□□□□ 0.26
TRIM28-209ENST00000597423 CCDC40Q4G0X9 1142 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 ZPBP2Q6X784 338 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 KIAA1586Q9HCI6 787 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 STARD7Q9NQZ5 370 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 LIMA1Q9UHB6 759 aaKnown RBP16.7■□□□□ 0.26
TRIM28-209ENST00000597423 OGDHLQ9ULD0 1010 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 NOD1Q9Y239 953 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 WDR81Q562E7 1941 aa16.7■□□□□ 0.26
TRIM28-209ENST00000597423 A0A0U1RQG5 324 aaPredicted RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 ACKR2O00590 384 aa16.69■□□□□ 0.26
TRIM28-209ENST00000597423 HNRNPDLO14979 420 aaKnown RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 SLC16A3O15427 465 aaKnown RBP16.69■□□□□ 0.26
TRIM28-209ENST00000597423 EXOC3O60645 756 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms