RNA–Protein interactions for RNA: ENST00000594759.5

LIG1-207, Transcript of DNA ligase 1, humanhuman

TSL 1 (best)

Gene LIG1, Length 4,102 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-207ENST00000594759 PRKAB2O43741 272 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 XRCC5P13010 732 aaKnown RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 ARFIP2P53365 341 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 KCTD19Q17RG1 926 aaPredicted RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 TBC1D25Q3MII6 688 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 TEKT1Q969V4 418 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 UIMC1Q96RL1 719 aa13.16□□□□□ -0.3
LIG1-207ENST00000594759 ZNF184Q99676 751 aaPredicted RBP13.16□□□□□ -0.3
LIG1-207ENST00000594759 RARAP10276 462 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ATP6V1B1P15313 513 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 PLCG1P19174 1290 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 TRIP13Q15645 432 aaPredicted RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 ANO5Q75V66 913 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 TRMT1LQ7Z2T5 733 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 NCAPG2Q86XI2 1143 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 METTL13Q8N6R0 699 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 SLC26A7Q8TE54 656 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 PGM2Q96G03 612 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 NUF2Q9BZD4 464 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ROPN1BQ9BZX4 212 aaPredicted RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 DRC3Q9H069 523 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ROPN1Q9HAT0 212 aaPredicted RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 UBAP1Q9NZ09 502 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 CLIC5Q9NZA1 410 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 SLC12A4Q9UP95 1085 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 NEURL4Q96JN8 1562 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 XDHP47989 1333 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 DCDC2CA8MYV0 355 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 MCF2LO15068 1137 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 TBCAO75347 108 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 PTPN4P29074 926 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 SERPINB8P50452 374 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 CC2D2BQ6DHV5 1058 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 EIF1ADQ8N9N8 165 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 SNX29Q8TEQ0 813 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ATXN2LQ8WWM7 1075 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 GLG1Q92896 1179 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 LENG1Q96BZ8 264 aaPredicted RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 NPHS2Q9NP85 383 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 PALLDQ8WX93 1383 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 MROH5Q6ZUA9 1318 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 PLEKHA8P1O95397 391 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 YY1P25490 414 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ARHGAP44Q17R89 818 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 RABGAP1LQ5R372 815 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ARL6IP4Q66PJ3 421 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 HPS3Q969F9 1004 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 TBC1D10AQ9BXI6 508 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 SMYD3Q9H7B4 428 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.15□□□□□ -0.32e-7■■■■■ 129.7
LIG1-207ENST00000594759 TBC1D23Q9NUY8 699 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 PPARGC1AQ9UBK2 798 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 AGAP1Q9UPQ3 857 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 ZNF148Q9UQR1 794 aa13.15□□□□□ -0.3
LIG1-207ENST00000594759 R3HDM2Q9Y2K5 976 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 DIS3Q9Y2L1 958 aaKnown RBP13.15□□□□□ -0.3
LIG1-207ENST00000594759 RBM47A0AV96 593 aaKnown RBP13.15□□□□□ -0.31
LIG1-207ENST00000594759 FCER1AP12319 257 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 ASPHQ12797 758 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 BNIP1Q12981 228 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 DCTN2Q13561 401 aaKnown RBP13.15□□□□□ -0.31
LIG1-207ENST00000594759 PDIA6Q15084 440 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 UBE3CQ15386 1083 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 SPRED3Q2MJR0 410 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 TMCO4Q5TGY1 634 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 SGMS1Q86VZ5 419 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 FBXO25Q8TCJ0 367 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 GRK7Q8WTQ7 553 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 MAML1Q92585 1016 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 RIC8AQ9NPQ8 531 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 NMRK1Q9NWW6 199 aa13.15□□□□□ -0.31
LIG1-207ENST00000594759 COL15A1P39059 1388 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 A0A087X0B3 334 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 WFS1O76024 890 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 ZNF554Q86TJ5 538 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 IGDCC4Q8TDY8 1250 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 KANSL2Q9H9L4 492 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 GNA11P29992 359 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 CHRNA3P32297 505 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 POLGP54098 1239 aaPredicted RBP13.14□□□□□ -0.31
LIG1-207ENST00000594759 SCARF1Q14162 830 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 KCTD21Q4G0X4 260 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 SGO2Q562F6 1265 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 TRIM67Q6ZTA4 783 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 JAMLQ86YT9 394 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 ARHGEF10LQ9HCE6 1279 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 PFDN4Q9NQP4 134 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 RPS6KL1Q9Y6S9 549 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 TJP3O95049 919 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 LRRC63Q05C16 580 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 ERFEQ4G0M1 354 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 MEI1Q5TIA1 1274 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 CCDC137Q6PK04 289 aaKnown RBP13.14□□□□□ -0.31
LIG1-207ENST00000594759 ZNF804AQ7Z570 1209 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 ZSCAN10Q96SZ4 725 aaPredicted RBP13.14□□□□□ -0.31
LIG1-207ENST00000594759 SEMA4AQ9H3S1 761 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 XAB2Q9HCS7 855 aaKnown RBP13.14□□□□□ -0.31
LIG1-207ENST00000594759 BCAP29Q9UHQ4 241 aa13.14□□□□□ -0.31
LIG1-207ENST00000594759 A0A1B0GVG6 124 aa13.13□□□□□ -0.31
LIG1-207ENST00000594759 LSM1O15116 133 aaKnown RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms