RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FIBCD1Q8N539 461 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 KCNG4Q8TDN1 519 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 SYMPKQ92797 1274 aaKnown RBP16.63■□□□□ 0.25
UPF1-202ENST00000594243 TGS1Q96RS0 853 aaKnown RBP16.63■□□□□ 0.25
UPF1-202ENST00000594243 CDX2Q99626 313 aaPredicted RBP16.63■□□□□ 0.25
UPF1-202ENST00000594243 C2orf40Q9H1Z8 148 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 C17orf75Q9HAS0 396 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 AGPAT5Q9NUQ2 364 aa16.63■□□□□ 0.25
UPF1-202ENST00000594243 A0A0C4DFX4 3053 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 HOXA2O43364 376 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 CUTAO60888 179 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 PLCG1P19174 1290 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 IBSPP21815 317 aaPredicted RBP16.62■□□□□ 0.25
UPF1-202ENST00000594243 GUCY2CP25092 1073 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 MBTD1Q05BQ5 628 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 BTG3Q14201 252 aaPredicted RBP16.62■□□□□ 0.25
UPF1-202ENST00000594243 ECHDC2Q86YB7 292 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 DEPTORQ8TB45 409 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 GUCD1Q96NT3 240 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 SAMD11Q96NU1 681 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 ZDHHC9Q9Y397 364 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 GBF1Q92538 1859 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 ADGRA3Q8IWK6 1321 aa16.62■□□□□ 0.25
UPF1-202ENST00000594243 HIP1RO75146 1068 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 RAB27AP51159 221 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 ERVK-21P61565 698 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 DNM1Q05193 864 aaKnown RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 RRAGBQ5VZM2 374 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 CDCA2Q69YH5 1023 aaPredicted RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 NOTUMQ6P988 496 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 USP49Q70CQ1 688 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 CMTR2Q8IYT2 770 aaKnown RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 LARP4BQ92615 738 aaKnown RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 RAD54LQ92698 747 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 PRIMPOLQ96LW4 560 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 GAS2L1Q99501 681 aaPredicted RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 RUSC1Q9BVN2 902 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 PRDM12Q9H4Q4 367 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 RC3H2Q9HBD1 1191 aaKnown RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 POLD4Q9HCU8 107 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 PRMT7Q9NVM4 692 aaPredicted RBP16.61■□□□□ 0.25
UPF1-202ENST00000594243 STK17AQ9UEE5 414 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 RWDD3Q9Y3V2 267 aa16.61■□□□□ 0.25
UPF1-202ENST00000594243 TSPAN1O60635 241 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 ZNF623O75123 536 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 ARHGEF15O94989 841 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 HOXA11P31270 313 aaPredicted RBP16.6■□□□□ 0.25
UPF1-202ENST00000594243 EFNA5P52803 228 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 PEX3P56589 373 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 NUCB2P80303 420 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 DMP1Q13316 513 aaPredicted RBP16.6■□□□□ 0.25
UPF1-202ENST00000594243 DHX8Q14562 1220 aaKnown RBP16.6■□□□□ 0.25
UPF1-202ENST00000594243 MAPK6Q16659 721 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 FAM187BQ17R55 369 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 CCDC73Q6ZRK6 1079 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 CNNM3Q8NE01 707 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 ARNTL2Q8WYA1 636 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 BSNDQ8WZ55 320 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 PGBD4Q96DM1 585 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 FZD8Q9H461 694 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 CERS4Q9HA82 394 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 BLOC1S4Q9NUP1 217 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 FAM105AQ9NUU6 356 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 RCOR1Q9UKL0 485 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 ODF2LQ9ULJ1 636 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 STXBP5LQ9Y2K9 1186 aa16.6■□□□□ 0.25
UPF1-202ENST00000594243 RBM19Q9Y4C8 960 aaKnown RBP16.6■□□□□ 0.25
UPF1-202ENST00000594243 CCDC169A6NNP5 214 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 SMTNP53814 917 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 KRT85P78386 507 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 RAD51AP2Q09MP3 1159 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 MCM6Q14566 821 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 ARSHQ5FYA8 562 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 PPP4R3CPQ6ZMV5 832 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 ABI1Q8IZP0 508 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 DAW1Q8N136 415 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 RNF169Q8NCN4 708 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 MYLIPQ8WY64 445 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 RSPH1Q8WYR4 309 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 CCDC51Q96ER9 411 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 NTPCRQ9BSD7 190 aaKnown RBP16.59■□□□□ 0.25
UPF1-202ENST00000594243 KMT5AQ9NQR1 393 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 LARSQ9P2J5 1176 aaKnown RBP16.59■□□□□ 0.25
UPF1-202ENST00000594243 PHLPP2Q6ZVD8 1323 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 COL4A6Q14031 1691 aa16.59■□□□□ 0.25
UPF1-202ENST00000594243 TTC3P53804 2025 aa16.58■□□□□ 0.25
UPF1-202ENST00000594243 A0A1B0GUA9 196 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 TBKBP1A7MCY6 615 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 SFI1A8K8P3 1242 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 K7ERI5 159 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 KRT18P05783 430 aaKnown RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 FGFR1P11362 822 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 PLS3P13797 630 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 FOSL2P15408 326 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 ARF4P18085 180 aaPredicted RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 NCLP19338 710 aaKnown RBP16.58■□□□□ 0.24
UPF1-202ENST00000594243 NPTX2P47972 431 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 ME1P48163 572 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 MAPK7Q13164 816 aa16.58■□□□□ 0.24
UPF1-202ENST00000594243 AMHR2Q16671 573 aa16.58■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms