RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 TARBP2Q15633 366 aaKnown RBP12.46□□□□□ -0.41
VPS4B-202ENST00000588059 PRR16Q569H4 304 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 CREB3L3Q68CJ9 461 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 TWF2Q6IBS0 349 aaKnown RBP12.46□□□□□ -0.41
VPS4B-202ENST00000588059 SYNE3Q6ZMZ3 975 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF280BQ86YH2 543 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 CMASQ8NFW8 434 aaPredicted RBP12.46□□□□□ -0.41
VPS4B-202ENST00000588059 LENG9Q96B70 501 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 EMILIN2Q9BXX0 1053 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 GCOM2Q9BZD3 368 aaPredicted RBP12.46□□□□□ -0.41
VPS4B-202ENST00000588059 GBP3Q9H0R5 595 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 TBC1D17Q9HA65 648 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 NRBP2Q9NSY0 501 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 FAM105AQ9NUU6 356 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 CA14Q9ULX7 337 aa12.46□□□□□ -0.41
VPS4B-202ENST00000588059 MIA3Q5JRA6 1907 aa12.46□□□□□ -0.42
VPS4B-202ENST00000588059 FRYLO94915 3013 aa12.46□□□□□ -0.42
VPS4B-202ENST00000588059 MTCL1Q9Y4B5 1905 aaKnown RBP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 A0A087WZ62 844 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 STK25O00506 426 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 OFD1O75665 1012 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 SSBP05455 408 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 SKIP12755 728 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 RFX1P22670 979 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 SFPQP23246 707 aaKnown RBP eCLIP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 FDXACB1Q9BRP7 624 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 WDR6Q9NNW5 1121 aaKnown RBP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 MAN1C1Q9NR34 630 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 DISC1Q9NRI5 854 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 FAM217BQ9NTX9 383 aaPredicted RBP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 DLL3Q9NYJ7 618 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 DLGAP2Q9P1A6 1054 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 EPS15L1Q9UBC2 864 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 BRPF3Q9ULD4 1205 aa12.45□□□□□ -0.42
VPS4B-202ENST00000588059 PIN4Q9Y237 131 aaKnown RBP12.45□□□□□ -0.42
VPS4B-202ENST00000588059 GPR179Q6PRD1 2367 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 CLUHO75153 1309 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 ESYT2A0FGR8 921 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 ZBTB43O43298 467 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 ZNF623O75123 536 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 SRFP11831 508 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 GBP2P32456 591 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 CIITAP33076 1130 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 RAB27AP51159 221 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 NECTIN1Q15223 517 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 NONOQ15233 471 aaKnown RBP eCLIP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 PFKFB3Q16875 520 aaPredicted RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 ZC3H14Q6PJT7 736 aaKnown RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 REXO1Q8N1G1 1221 aaKnown RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 SLC44A3Q8N4M1 653 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 RUBCNQ92622 972 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 TCEANC2Q96MN5 208 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 MYADMQ96S97 322 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 CEP89Q96ST8 783 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 HINFPQ9BQA5 517 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 RHOBTB2Q9BYZ6 727 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 MRPL17Q9NRX2 175 aaKnown RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 STK39Q9UEW8 545 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 MYH15Q9Y2K3 1946 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 TPRP12270 2363 aaKnown RBP12.44□□□□□ -0.42
VPS4B-202ENST00000588059 PATJQ8NI35 1801 aa12.44□□□□□ -0.42
VPS4B-202ENST00000588059 EPG5Q9HCE0 2579 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 IGKV6-21A0A0C4DH24 114 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 CCDC195A0A1B0GUA6 201 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 TMEM150BA6NC51 233 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 GOLGA8AA7E2F4 631 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 GOLGA8BA8MQT2 603 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 INPPL1O15357 1258 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 CHMP2AO43633 222 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 DDHD2O94830 711 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 DCNP07585 359 aaKnown RBP12.43□□□□□ -0.42
VPS4B-202ENST00000588059 SP9P0CG40 484 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 CDC27P30260 824 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 AFF1P51825 1210 aaKnown RBP12.43□□□□□ -0.42
VPS4B-202ENST00000588059 CDC42EP1Q00587 391 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 MTERF2Q49AM1 385 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 SPECC1Q5M775 1068 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 PHLDB3Q6NSJ2 640 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 AGMOQ6ZNB7 445 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 CENPQQ7L2Z9 268 aaPredicted RBP12.43□□□□□ -0.42
VPS4B-202ENST00000588059 ZNF410Q86VK4 478 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 DCLK2Q8N568 766 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 URGCPQ8TCY9 931 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 GPR152Q8TDT2 470 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 STAMQ92783 540 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 ZMYND12Q9H0C1 365 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 UNC45AQ9H3U1 944 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 ARHGEF3Q9NR81 526 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 SEPT9Q9UHD8 586 aaPredicted RBP12.43□□□□□ -0.42
VPS4B-202ENST00000588059 DOCK6Q96HP0 2047 aa12.43□□□□□ -0.42
VPS4B-202ENST00000588059 C2CD2LO14523 706 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 MSH4O15457 936 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 TEX28O15482 410 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 EDIL3O43854 480 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 RFPL2O75678 378 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 STBD1O95210 358 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 SOD2P04179 222 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 URODP06132 367 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 SFNP31947 248 aa12.42□□□□□ -0.42
VPS4B-202ENST00000588059 JAK3P52333 1124 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms