RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 TSPAN1O60635 241 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 USO1O60763 962 aaKnown RBP16.87■□□□□ 0.29
CLIP3-202ENST00000585466 PRPHP41219 470 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 ATP2C1P98194 919 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-202ENST00000585466 MBTD1Q05BQ5 628 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 HYAL1Q12794 435 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 PDIA5Q14554 519 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 MXD4Q14582 209 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-202ENST00000585466 CTC1Q2NKJ3 1217 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 HELQQ8TDG4 1101 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 BSNDQ8WZ55 320 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 LPPQ93052 612 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 NACC1Q96RE7 527 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 MMTAG2Q9BU76 263 aaKnown RBP16.87■□□□□ 0.29
CLIP3-202ENST00000585466 NFKBIZQ9BYH8 718 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 POLR3FQ9H1D9 316 aaPredicted RBP16.87■□□□□ 0.29
CLIP3-202ENST00000585466 SMC3Q9UQE7 1217 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 PCDHGC5Q9Y5F6 944 aa16.87■□□□□ 0.29
CLIP3-202ENST00000585466 PP2D1A8MPX8 630 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 MUTP22033 750 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 GTF2F1P35269 517 aaKnown RBP eCLIP16.86■□□□□ 0.29
CLIP3-202ENST00000585466 LTBRP36941 435 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 RILPL1Q5EBL4 403 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 MCTP1Q6DN14 999 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 TWF2Q6IBS0 349 aaKnown RBP16.86■□□□□ 0.29
CLIP3-202ENST00000585466 MRPL10Q7Z7H8 261 aaKnown RBP16.86■□□□□ 0.29
CLIP3-202ENST00000585466 ADGRD2Q7Z7M1 963 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 LRRC43Q8N309 656 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 RNF169Q8NCN4 708 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 ADAMTS19Q8TE59 1207 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 POF1BQ8WVV4 589 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 LRWD1Q9UFC0 647 aa16.86■□□□□ 0.29
CLIP3-202ENST00000585466 LAD1O00515 517 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 FSCN2O14926 492 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 B4GALT3O60512 393 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 FGF18O76093 207 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 LAG3P18627 525 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 PBX3P40426 434 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 RAB27AP51159 221 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 CDCA2Q69YH5 1023 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 PADI6Q6TGC4 694 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 AGMOQ6ZNB7 445 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 SMG8Q8ND04 991 aaKnown RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 GADD45GIP1Q8TAE8 222 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 ERMNQ8TAM6 284 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 SYMPKQ92797 1274 aaKnown RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 PABPC5Q96DU9 382 aaKnown RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 NECAB3Q96P71 396 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-202ENST00000585466 PCDHB2Q9Y5E7 798 aa16.85■□□□□ 0.29
CLIP3-202ENST00000585466 B4GALT5O43286 388 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 OFD1O75665 1012 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 CYP11B2P19099 503 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 CDC25AP30304 524 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 CCT6AP40227 531 aaKnown RBP16.84■□□□□ 0.29
CLIP3-202ENST00000585466 AFF1P51825 1210 aaKnown RBP16.84■□□□□ 0.29
CLIP3-202ENST00000585466 PLCB3Q01970 1234 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 PCBP1Q15365 356 aaKnown RBP eCLIP16.84■□□□□ 0.29
CLIP3-202ENST00000585466 LEXMQ3ZCV2 418 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 LONRF3Q496Y0 759 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 HAUS3Q68CZ6 603 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 KCNT2Q6UVM3 1135 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 KCNK18Q7Z418 384 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 MCPH1Q8NEM0 835 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 EIF2AQ9BY44 585 aaKnown RBP16.84■□□□□ 0.29
CLIP3-202ENST00000585466 PCDHB12Q9Y5F1 795 aa16.84■□□□□ 0.29
CLIP3-202ENST00000585466 H3BQV1 296 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 LINC01565O15544 149 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 TBX10O75333 385 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 CSPG5O95196 566 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 EDN1P05305 212 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 ARF4P18085 180 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-202ENST00000585466 KCNA5P22460 613 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 ERVFC1P60507 584 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 UBE3AQ05086 875 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 DLX2Q07687 328 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-202ENST00000585466 TFDP1Q14186 410 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 AAK1Q2M2I8 961 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 LARP1BQ659C4 914 aaKnown RBP16.83■□□□□ 0.28
CLIP3-202ENST00000585466 MAEAQ7L5Y9 396 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 TMEM173Q86WV6 379 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-202ENST00000585466 SLC39A11Q8N1S5 342 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 SNX29Q8TEQ0 813 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 CPB2Q96IY4 423 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 CCDC43Q96MW1 224 aaKnown RBP16.83■□□□□ 0.28
CLIP3-202ENST00000585466 AAASQ9NRG9 546 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 TBC1D13Q9NVG8 400 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 KIAA1024Q9UPX6 916 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 LZTS1Q9Y250 596 aa16.83■□□□□ 0.28
CLIP3-202ENST00000585466 TTLL13PA6NNM8 815 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 INO80B-WBP1J3KQ70 363 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 INPPL1O15357 1258 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 SKIP12755 728 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 NCLP19338 710 aaKnown RBP16.82■□□□□ 0.28
CLIP3-202ENST00000585466 CSPP1Q1MSJ5 1256 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 HYIQ5T013 277 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 SPOUT1Q5T280 376 aaKnown RBP16.82■□□□□ 0.28
CLIP3-202ENST00000585466 PPP4R3CPQ6ZMV5 832 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 THNSL1Q8IYQ7 743 aa16.82■□□□□ 0.28
CLIP3-202ENST00000585466 ABI1Q8IZP0 508 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms