RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	TMEM62	Q0P6H9	643 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	MOGS	Q13724	837 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	SLC9A5	Q14940	896 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	PGS1	Q32NB8	556 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	ZNF385B	Q569K4	471 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	HABP4	Q5JVS0	413 aa	Known RBP	5.93	□□□□□ -1.46
SS18-223	ENST00000583595	CC2D1A	Q6P1N0	951 aa	Predicted RBP	5.93	□□□□□ -1.46
SS18-223	ENST00000583595	CCDC62	Q6P9F0	684 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	TMC6	Q7Z403	805 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	DENND1C	Q8IV53	801 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	THEMIS	Q8N1K5	641 aa	Predicted RBP	5.93	□□□□□ -1.46
SS18-223	ENST00000583595	PIP4K2C	Q8TBX8	421 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	SIGLEC10	Q96LC7	697 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	PAGR1	Q9BTK6	254 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	WDR12	Q9GZL7	423 aa	Known RBP	5.93	□□□□□ -1.46
SS18-223	ENST00000583595	SAGE1	Q9NXZ1	904 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	ZNF69	Q9UC07	566 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	CDC23	Q9UJX2	597 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	IRAK3	Q9Y616	596 aa		5.93	□□□□□ -1.46
SS18-223	ENST00000583595	PRSS38	A1L453	326 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PRRT4	C9JH25	899 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	RFXAP	O00287	272 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	NPHS1	O60500	1241 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	COL6A1	P12109	1028 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PI3	P19957	117 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PEX2	P28328	305 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	IL6ST	P40189	918 aa	Predicted RBP	5.92	□□□□□ -1.46
SS18-223	ENST00000583595	CDR1	P51861	262 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	IFIT5	Q13325	482 aa	Known RBP	5.92	□□□□□ -1.46
SS18-223	ENST00000583595	CNN3	Q15417	329 aa	Known RBP	5.92	□□□□□ -1.46
SS18-223	ENST00000583595	ELF2	Q15723	593 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PITRM1	Q5JRX3	1037 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	LCE4A	Q5TA78	99 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	SWSAP1	Q6NVH7	229 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	RPTN	Q6XPR3	784 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	LDHAL6A	Q6ZMR3	332 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	KRBA2	Q6ZNG9	492 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	MMS22L	Q6ZRQ5	1243 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	CXorf67	Q86X51	503 aa	Predicted RBP	5.92	□□□□□ -1.46
SS18-223	ENST00000583595	TMTC2	Q8N394	836 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	MZB1	Q8WU39	189 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PKNOX2	Q96KN3	472 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	C16orf92	Q96LL3	132 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	CDC5L	Q99459	802 aa	Known RBP	5.92	□□□□□ -1.46
SS18-223	ENST00000583595	PDLIM7	Q9NR12	457 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	MARCH2	Q9P0N8	246 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	GULP1	Q9UBP9	304 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	NRBP1	Q9UHY1	535 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	DSE	Q9UL01	958 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595	LIMCH1	Q9UPQ0	1083 aa		5.92	□□□□□ -1.46
SS18-223	ENST00000583595		A0A1W2PQJ5	194 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	RASA4B	C9J798	803 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	GOLIM4	O00461	696 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	ELL2	O00472	640 aa	Predicted RBP	5.91	□□□□□ -1.46
SS18-223	ENST00000583595	MAFG	O15525	162 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	RASA4	O43374	803 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	CLASP2	O75122	1294 aa	Known RBP	5.91	□□□□□ -1.46
SS18-223	ENST00000583595	AGR2	O95994	175 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	EDNRB	P24530	442 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	HTR1B	P28222	390 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	MAN1A1	P33908	653 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	MANF	P55145	182 aa	Known RBP	5.91	□□□□□ -1.46
SS18-223	ENST00000583595	TUSC3	Q13454	348 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	NR1I3	Q14994	352 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	5.91	□□□□□ -1.46
SS18-223	ENST00000583595	LMBR1L	Q6UX01	489 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	LDHD	Q86WU2	507 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	ZZZ3	Q8IYH5	903 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	DEPTOR	Q8TB45	409 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	SSH1	Q8WYL5	1049 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	CCT6B	Q92526	530 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	KIAA1191	Q96A73	305 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	CGRRF1	Q99675	332 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	VPS11	Q9H270	941 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	SRPK3	Q9UPE1	567 aa		5.91	□□□□□ -1.46
SS18-223	ENST00000583595	hCG_1642624	A0A1W2PR95	340 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	C22orf46	C9J442	243 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	FAM227A	F5H4B4	570 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	NCK2	O43639	380 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	FUCA1	P04066	466 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	LDHC	P07864	332 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	FAM163B	P0C2L3	166 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	ABCB4	P21439	1286 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	TACR1	P25103	407 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	CCT2	P78371	535 aa	Known RBP	5.9	□□□□□ -1.46
SS18-223	ENST00000583595	CDK17	Q00537	523 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	CATSPERE	Q5SY80	951 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	TCERG1L	Q5VWI1	586 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	BICRAL	Q6AI39	1079 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	FAM9B	Q8IZU0	186 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	MPP4	Q96JB8	637 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	EIF2AK1	Q9BQI3	630 aa	Known RBP	5.9	□□□□□ -1.46
SS18-223	ENST00000583595	NUP62CL	Q9H1M0	184 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	KCNH7	Q9NS40	1196 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	5.9	□□□□□ -1.46
SS18-223	ENST00000583595	LRCH1	Q9Y2L9	728 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	ATP23	Q9Y6H3	246 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	SCIN	Q9Y6U3	715 aa		5.9	□□□□□ -1.46
SS18-223	ENST00000583595	CFAP69	A5D8W1	941 aa		5.89	□□□□□ -1.47
SS18-223	ENST00000583595	CCDC154	A6NI56	674 aa		5.89	□□□□□ -1.47

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