RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, human

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RFFL-208	ENST00000581039	RFX1	P22670	979 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	ADD1	P35611	737 aa	Known RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	SLC11A1	P49279	550 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	RAB27A	P51159	221 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	CLCN4	P51793	760 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	JAK3	P52333	1124 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	FGD1	P98174	961 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	DRP2	Q13474	957 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	NONO	Q15233	471 aa	Known RBP eCLIP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	TARBP2	Q15633	366 aa	Known RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	C15orf39	Q6ZRI6	1047 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	FEZF2	Q8TBJ5	459 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	BICD2	Q8TD16	824 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	BCL7C	Q8WUZ0	217 aa	Predicted RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	CCDC136	Q96JN2	1154 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	FAM193B	Q96PV7	902 aa	Predicted RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	RIT2	Q99578	217 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	FDXACB1	Q9BRP7	624 aa	Predicted RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	NIFK	Q9BYG3	293 aa	Known RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	MRPL17	Q9NRX2	175 aa	Known RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	FAM105A	Q9NUU6	356 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	WNT16	Q9UBV4	365 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	DNAJB4	Q9UDY4	337 aa		11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	PIN4	Q9Y237	131 aa	Known RBP	11.18	□□□□□ -0.62
RFFL-208	ENST00000581039	ADAMTS3	O15072	1205 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	MSH4	O15457	936 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	LMNA	P02545	664 aa	Known RBP	11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	CFH	P08603	1231 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	RCAN1	P53805	252 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	AKAP17A	Q02040	695 aa	Known RBP	11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	UGCG	Q16739	394 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	MTERF2	Q49AM1	385 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	XKR3	Q5GH77	459 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	LRCH2	Q5VUJ6	765 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	ELMSAN1	Q6PJG2	1045 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	CATSPER4	Q7RTX7	472 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	ZNF410	Q86VK4	478 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	ZNF280B	Q86YH2	543 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	RHPN2	Q8IUC4	686 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	URGCP	Q8TCY9	931 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	STAM	Q92783	540 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	LENG9	Q96B70	501 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	VN1R3	Q9BXE9	311 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	TEKT3	Q9BXF9	490 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	KANSL3	Q9P2N6	904 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	SUCLA2	Q9P2R7	463 aa	Predicted RBP	11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	SEPT9	Q9UHD8	586 aa	Predicted RBP	11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	DPP7	Q9UHL4	492 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	SSX2IP	Q9Y2D8	614 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	FAN1	Q9Y2M0	1017 aa		11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	MYH9	P35579	1960 aa	Known RBP	11.17	□□□□□ -0.62
RFFL-208	ENST00000581039	DMD	P11532	3685 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	EP300	Q09472	2414 aa	Predicted RBP	11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	IGKV6-21	A0A0C4DH24	114 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	MEIS3P2	A8K0S8	358 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	DDX11L8	A8MPP1	907 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	PRPF3	O43395	683 aa	Known RBP	11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	NARS	O43776	548 aa	Known RBP	11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	GBP2	P32456	591 aa	Predicted RBP	11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	USP11	P51784	963 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	MIER3	Q7Z3K6	550 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	CMAS	Q8NFW8	434 aa	Predicted RBP	11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	RDM1	Q8NG50	284 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	SLC5A5	Q92911	643 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	TMEM175	Q9BSA9	504 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	UNC45A	Q9H3U1	944 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	PCDHB2	Q9Y5E7	798 aa		11.16	□□□□□ -0.62
RFFL-208	ENST00000581039	CCDC195	A0A1B0GUA6	201 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	C2CD2L	O14523	706 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	LILRB3	O75022	631 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	MAF	O75444	373 aa	Predicted RBP	11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	DDHD2	O94830	711 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	UROD	P06132	367 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	ADH1A	P07327	375 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	HMGB1	P09429	215 aa	Known RBP	11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	AK2	P54819	239 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	KRT32	Q14532	448 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	TSGA10IP	Q3SY00	556 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	CYP26C1	Q6V0L0	522 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	DGLUCY	Q7Z3D6	616 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	KSR1	Q8IVT5	923 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	KIAA2013	Q8IYS2	634 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	SLC44A3	Q8N4M1	653 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	CCDC148	Q8NFR7	591 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	RSAD2	Q8WXG1	361 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	NXPE3	Q969Y0	559 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	NLRP4	Q96MN2	994 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	YTHDC1	Q96MU7	727 aa	Known RBP	11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	JPH2	Q9BR39	696 aa	Predicted RBP	11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	SH2D3A	Q9BRG2	576 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	WDR6	Q9NNW5	1121 aa	Known RBP	11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	MAN1C1	Q9NR34	630 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	VPS13A	Q96RL7	3174 aa		11.15	□□□□□ -0.62
RFFL-208	ENST00000581039	KRBA1	A5PL33	1030 aa		11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	TMEM150B	A6NC51	233 aa		11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	NRP1	O14786	923 aa		11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	B4GALT3	O60512	393 aa		11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	N4BP1	O75113	896 aa	Known RBP	11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	STBD1	O95210	358 aa		11.14	□□□□□ -0.63
RFFL-208	ENST00000581039	GLUD1	P00367	558 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms