RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 STARD7Q9NQZ5 370 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 TRAF3IP3Q9Y228 551 aa17.77■□□□□ 0.44
SS18-211ENST00000578954 DENND3A2RUS2 1198 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 LRRIQ4A6NIV6 560 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 SMTNL1A8MU46 457 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 MYCP01106 439 aaPredicted RBP17.76■□□□□ 0.43
SS18-211ENST00000578954 GPC3P51654 580 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 EFNA5P52803 228 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 PMS1P54277 932 aaKnown RBP17.76■□□□□ 0.43
SS18-211ENST00000578954 PTENP60484 403 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 PPP4R3CPQ6ZMV5 832 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 RHPN2Q8IUC4 686 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 ZC3H3Q8IXZ2 948 aaKnown RBP17.76■□□□□ 0.43
SS18-211ENST00000578954 NME8Q8N427 588 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 AOPEPQ8N6M6 819 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 ANKLE1Q8NAG6 615 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 RNF149Q8NC42 400 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 CCDC113Q9H0I3 377 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 TMEM206Q9H813 350 aa17.76■□□□□ 0.43
SS18-211ENST00000578954 TYW1Q9NV66 732 aaKnown RBP17.76■□□□□ 0.43
SS18-211ENST00000578954 ARVCFO00192 962 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 PDXKO00764 312 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 PIGRP01833 764 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 CDK7P50613 346 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 SNRPFP62306 86 aaKnown RBP17.75■□□□□ 0.43
SS18-211ENST00000578954 KCNA1Q09470 495 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 NFIL3Q16649 462 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 EDRF1Q3B7T1 1238 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 FAM47CQ5HY64 1035 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 SPATA1Q5VX52 437 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 LUZP1Q86V48 1076 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 KSR1Q8IVT5 923 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 NELFCDQ8IXH7 590 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 TMEM174Q8WUU8 243 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 ACCSQ96QU6 501 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 DUSP9Q99956 384 aaKnown RBP17.75■□□□□ 0.43
SS18-211ENST00000578954 MCOLN1Q9GZU1 580 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 ADAMTS10Q9H324 1103 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 IFT122Q9HBG6 1241 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 TBX20Q9UMR3 447 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 AKT3Q9Y243 479 aa17.75■□□□□ 0.43
SS18-211ENST00000578954 TRIM49BA6NDI0 452 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 TGFB1I1O43294 461 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 GPR32O75388 356 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 VTNP04004 478 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 COL6A1P12109 1028 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 PHKA2P46019 1235 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 STX17P56962 302 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 UVSSAQ2YD98 709 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 ANKRD40Q6AI12 368 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 ZBTB8OSQ8IWT0 167 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 RNF214Q8ND24 703 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 VTI1AQ96AJ9 217 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 HSD3B7Q9H2F3 369 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 CGNQ9P2M7 1197 aaKnown RBP17.74■□□□□ 0.43
SS18-211ENST00000578954 EXOC7Q9UPT5 735 aa17.74■□□□□ 0.43
SS18-211ENST00000578954 A0A087WZ62 844 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 GOLGA6L3A6NEY3 463 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 BECN2A8MW95 431 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 PTK7Q13308 1070 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 PTGISQ16647 500 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 FAM187BQ17R55 369 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 SRGAP1Q7Z6B7 1085 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 C12orf56Q8IXR9 622 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 GOLGA5Q8TBA6 731 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 DNAJB3Q8WWF6 145 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 NLRP4Q96MN2 994 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 TSG101Q99816 390 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 FDXACB1Q9BRP7 624 aaPredicted RBP17.73■□□□□ 0.43
SS18-211ENST00000578954 FAM49AQ9H0Q0 323 aaPredicted RBP17.73■□□□□ 0.43
SS18-211ENST00000578954 GBP3Q9H0R5 595 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 FZD8Q9H461 694 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 NFE2L3Q9Y4A8 694 aa17.73■□□□□ 0.43
SS18-211ENST00000578954 K7ERI5 159 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 CALUO43852 315 aaPredicted RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 CAND2O75155 1236 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 TFRCP02786 760 aaKnown RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 SRGAP2CP0DJJ0 459 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 ZNF18P17022 549 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 NLRP11P59045 1033 aaKnown RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 MBTD1Q05BQ5 628 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 MYBPC2Q14324 1141 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 TRIM71Q2Q1W2 868 aaKnown RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 C1orf53Q5VUE5 145 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 LRRC55Q6ZSA7 311 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 SLC9A9Q8IVB4 645 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 NOC3LQ8WTT2 800 aaKnown RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 WNT8BQ93098 351 aa17.72■□□□□ 0.43
SS18-211ENST00000578954 KIAA0100Q14667 2235 aaKnown RBP17.72■□□□□ 0.43
SS18-211ENST00000578954 GOLGA6L19H0YKK7 550 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 FKBP3Q00688 224 aaKnown RBP17.71■□□□□ 0.43
SS18-211ENST00000578954 RBL2Q08999 1139 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 MGAT3Q09327 533 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 STRN3Q13033 797 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 SNX17Q15036 470 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 PCBP1Q15365 356 aaKnown RBP eCLIP17.71■□□□□ 0.43
SS18-211ENST00000578954 MAPK6Q16659 721 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 CDKAL1Q5VV42 579 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 ZPBP2Q6X784 338 aa17.71■□□□□ 0.43
SS18-211ENST00000578954 HS2ST1Q7LGA3 356 aa17.71■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms