RNA–Protein interactions for RNA: ENST00000577572.5

SS18-206, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 510 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-206ENST00000577572 STRN3Q13033 797 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 CAPSQ13938 189 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 FILIP1Q7Z7B0 1213 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 SYCP3Q8IZU3 236 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 SH3TC2Q8TF17 1288 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 TRAPPC12Q8WVT3 735 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 ARMC5Q96C12 935 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 GLT1D1Q96MS3 346 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 MKNK1Q9BUB5 465 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 FGFBP2Q9BYJ0 223 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 HSD3B7Q9H2F3 369 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 MAGEC2Q9UBF1 373 aaPredicted RBP16.78■□□□□ 0.28
SS18-206ENST00000577572 PHF24Q9UPV7 400 aa16.78■□□□□ 0.28
SS18-206ENST00000577572 LRRIQ4A6NIV6 560 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 K7ERI5 159 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 TGFB1I1O43294 461 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 TPM3P06753 285 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 CDK11BP21127 795 aaKnown RBP16.77■□□□□ 0.28
SS18-206ENST00000577572 PMS1P54277 932 aaKnown RBP16.77■□□□□ 0.28
SS18-206ENST00000577572 MARSP56192 900 aaKnown RBP16.77■□□□□ 0.28
SS18-206ENST00000577572 SOX10P56693 466 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 PTENP60484 403 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 FAM187BQ17R55 369 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 NBPF20Q3BBV1 942 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 ZC2HC1CQ53FD0 456 aaPredicted RBP16.77■□□□□ 0.28
SS18-206ENST00000577572 ZPBP2Q6X784 338 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 NELFCDQ8IXH7 590 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 KIAA0319LQ8IZA0 1049 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 LRRC71Q8N4P6 559 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 SRRTQ9BXP5 876 aaKnown RBP16.77■□□□□ 0.28
SS18-206ENST00000577572 POLD4Q9HCU8 107 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 HDAC6Q9UBN7 1215 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 OGDHLQ9ULD0 1010 aa16.77■□□□□ 0.28
SS18-206ENST00000577572 KBTBD13C9JR72 458 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 MAPK13O15264 365 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 SLC16A3O15427 465 aaKnown RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 CBFA2T2O43439 604 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 HSPA1AP0DMV8 641 aaKnown RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 HSPA1BP0DMV9 641 aaKnown RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 CCL5P13501 91 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 CLCN3P51790 818 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 IRX5P78411 483 aaPredicted RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 ENPEPQ07075 957 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 DRP2Q13474 957 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 MAPK6Q16659 721 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 SLFN12LQ6IEE8 588 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 LRRC55Q6ZSA7 311 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 FAM43BQ6ZT52 329 aaPredicted RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 SRGAP1Q7Z6B7 1085 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 RSPH3Q86UC2 560 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 RHPN2Q8IUC4 686 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 RNF149Q8NC42 400 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 PRIMPOLQ96LW4 560 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 INO80BQ9C086 356 aaPredicted RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 UNC93B1Q9H1C4 597 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 AGPAT3Q9NRZ7 376 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 DMAC2Q9NW81 257 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 LIMA1Q9UHB6 759 aaKnown RBP16.76■□□□□ 0.27
SS18-206ENST00000577572 SCN10AQ9Y5Y9 1956 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 ZMYM2Q9UBW7 1377 aa16.76■□□□□ 0.27
SS18-206ENST00000577572 ADGRA3Q8IWK6 1321 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 TRIM49BA6NDI0 452 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 CAND2O75155 1236 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 NR3C1P04150 777 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 TPM2P07951 284 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 CYP2C9P11712 490 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 GARTP22102 1010 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 NR2F2P24468 414 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 LBX1P52954 281 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 PPP2R3AQ06190 1150 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 ADAM9Q13443 819 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 FILIP1LQ4L180 1135 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 TCP11X2Q5H9J9 407 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 SLC43A3Q8NBI5 491 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 ZNF333Q96JL9 665 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 CRISPLD2Q9H0B8 497 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 CCDC113Q9H0I3 377 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 FZD8Q9H461 694 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 METTL14Q9HCE5 456 aaKnown RBP16.75■□□□□ 0.27
SS18-206ENST00000577572 KIAA1586Q9HCI6 787 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 SAMSN1Q9NSI8 373 aaKnown RBP16.75■□□□□ 0.27
SS18-206ENST00000577572 PRMT7Q9NVM4 692 aaPredicted RBP16.75■□□□□ 0.27
SS18-206ENST00000577572 AKT3Q9Y243 479 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 STYXL1Q9Y6J8 313 aa16.75■□□□□ 0.27
SS18-206ENST00000577572 ACKR2O00590 384 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 GJB1P08034 283 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 GPC3P51654 580 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 FANCCQ00597 558 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 KCNA1Q09470 495 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 ITGA7Q13683 1181 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 FRMD5Q7Z6J6 570 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 SERINC5Q86VE9 423 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 MRFAP1L1Q96HT8 127 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 MRPL4Q9BYD3 311 aaKnown RBP16.74■□□□□ 0.27
SS18-206ENST00000577572 RNF208Q9H0X6 261 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 PRDM10Q9NQV6 1147 aa16.74■□□□□ 0.27
SS18-206ENST00000577572 A0A0U1RQG5 324 aaPredicted RBP16.73■□□□□ 0.27
SS18-206ENST00000577572 KCNJ18B7U540 433 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 TREHO43280 583 aa16.73■□□□□ 0.27
SS18-206ENST00000577572 SERPINC1P01008 464 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms