RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 SALL3Q9BXA9 1300 aa14.84□□□□□ -0.03
CCDC40-208ENST00000572270 SPEGQ15772 3267 aa14.84□□□□□ -0.03
CCDC40-208ENST00000572270 COL4A3Q01955 1670 aa14.84□□□□□ -0.03
CCDC40-208ENST00000572270 FASNP49327 2511 aaKnown RBP14.84□□□□□ -0.03
CCDC40-208ENST00000572270 IGKV6D-21A0A0A0MT36 114 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 ERICH2A1L162 156 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 ATG7O95352 703 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 MYBP10242 640 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 TMOD1P28289 359 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 KIF5BP33176 963 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 SLC11A1P49279 550 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 CLCN3P51790 818 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 CSRP2Q16527 193 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 NOMO2Q5JPE7 1267 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 MTSS1LQ765P7 747 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 MXRA8Q9BRK3 442 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 DNAJB4Q9UDY4 337 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 CEP131Q9UPN4 1083 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 RALGAPA1Q6GYQ0 2036 aa14.83□□□□□ -0.04
CCDC40-208ENST00000572270 ZBTB42B2RXF5 422 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 LILRB3O75022 631 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 SKIP12755 728 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 CD72P21854 359 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 PHKA2P46019 1235 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 RPS9P46781 194 aaKnown RBP14.82□□□□□ -0.04
CCDC40-208ENST00000572270 UBE2SQ16763 222 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 CCDC60Q8IWA6 550 aaPredicted RBP14.82□□□□□ -0.04
CCDC40-208ENST00000572270 FGF14Q92915 247 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 RILPL2Q969X0 211 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 NELL2Q99435 816 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 PCDHA6Q9UN73 950 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 PCDHA8Q9Y5H6 950 aa14.82□□□□□ -0.04
CCDC40-208ENST00000572270 DDX39AO00148 427 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 MAGEB2O15479 319 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 GDF9O60383 454 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 FGFR4P22455 802 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 TARSP26639 723 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 TRDNQ13061 729 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 LONRF3Q496Y0 759 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 TWF2Q6IBS0 349 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 MIS18BP1Q6P0N0 1132 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 PARM1Q6UWI2 310 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 UNQ6494/PRO21346Q6UXR6 183 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ABHD15Q6UXT9 468 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 CYB5R4Q7L1T6 521 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 TRMT1LQ7Z2T5 733 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 URGCPQ8TCY9 931 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 HDAC7Q8WUI4 952 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 LPPQ93052 612 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 CLDN23Q96B33 292 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ZNF707Q96C28 371 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ZNF668Q96K58 619 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 FAM193BQ96PV7 902 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 RPS6KC1Q96S38 1066 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 RPP25Q9BUL9 199 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 SPZ1Q9BXG8 430 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 NT5C3AQ9H0P0 336 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ADAMTS10Q9H324 1103 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 PLEKHA4Q9H4M7 779 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 FAM217BQ9NTX9 383 aaPredicted RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 ZDHHC7Q9NXF8 308 aa14.81□□□□□ -0.04
CCDC40-208ENST00000572270 MRPS17Q9Y2R5 130 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 MYH9P35579 1960 aaKnown RBP14.81□□□□□ -0.04
CCDC40-208ENST00000572270 IFIT3O14879 490 aaKnown RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 TEX28O15482 410 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 SOD2P04179 222 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 DARSP14868 501 aaKnown RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 FSHRP23945 695 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 PDE1AP54750 535 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 TROAPQ12815 778 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 ITGB3BPQ13352 177 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 AASDHQ4L235 1098 aaPredicted RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 EFCAB12Q6NXP0 572 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 TPRG1Q6ZUI0 275 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 CATIPQ7Z7H3 387 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 NLRP7Q8WX94 980 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 HERC2P3Q9BVR0 1158 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 PRKD2Q9BZL6 878 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 AGO4Q9HCK5 861 aaKnown RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 CHST12Q9NRB3 414 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 FAN1Q9Y2M0 1017 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 ZZEF1O43149 2961 aa14.8□□□□□ -0.04
CCDC40-208ENST00000572270 MTCL1Q9Y4B5 1905 aaKnown RBP14.8□□□□□ -0.04
CCDC40-208ENST00000572270 ALDH2P05091 517 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 GPC3P51654 580 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 MTAPQ13126 283 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 SIM2Q14190 667 aaPredicted RBP14.79□□□□□ -0.04
CCDC40-208ENST00000572270 SART3Q15020 963 aaKnown RBP14.79□□□□□ -0.04
CCDC40-208ENST00000572270 SWSAP1Q6NVH7 229 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 ZNF852Q6ZMS4 543 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 LRRC71Q8N4P6 559 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 TMEM175Q9BSA9 504 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 DSCC1Q9BVC3 393 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 CDH7Q9ULB5 785 aa14.79□□□□□ -0.04
CCDC40-208ENST00000572270 C1QTNF9BB2RNN3 333 aa14.78□□□□□ -0.04
CCDC40-208ENST00000572270 OFD1O75665 1012 aa14.78□□□□□ -0.04
CCDC40-208ENST00000572270 CCNE2O96020 404 aa14.78□□□□□ -0.04
CCDC40-208ENST00000572270 C1QTNF9P0C862 333 aa14.78□□□□□ -0.04
CCDC40-208ENST00000572270 SPATA31D3P0C874 917 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms