RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 SSBP05455 408 aaKnown RBP eCLIP21.58■■□□□ 1.05
NUP88-203ENST00000572019 NUBP1P53384 320 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 FGD1P98174 961 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 NOMO2Q5JPE7 1267 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 PLA2G4FQ68DD2 849 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 RHPN2Q8IUC4 686 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 CCDC12Q8WUD4 166 aaPredicted RBP21.58■■□□□ 1.05
NUP88-203ENST00000572019 JAKMIP1Q96N16 626 aaKnown RBP21.58■■□□□ 1.05
NUP88-203ENST00000572019 TRAIPQ9BWF2 469 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 SLC26A6Q9BXS9 759 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 CHST12Q9NRB3 414 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 DZANK1Q9NVP4 752 aa21.58■■□□□ 1.05
NUP88-203ENST00000572019 ARID2Q68CP9 1835 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 CCDC196A0A1B0GTZ2 297 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 SFNP31947 248 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 JAK3P52333 1124 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 POLGP54098 1239 aaPredicted RBP21.57■■□□□ 1.04
NUP88-203ENST00000572019 KRT32Q14532 448 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 MCTP2Q6DN12 878 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 AGMOQ6ZNB7 445 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 MIER3Q7Z3K6 550 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 ZNF710Q8N1W2 664 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 ZNF579Q8NAF0 562 aaKnown RBP21.57■■□□□ 1.04
NUP88-203ENST00000572019 TBCKQ8TEA7 893 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 KCNB2Q92953 911 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 NLRP4Q96MN2 994 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 SUCLA2Q9P2R7 463 aaPredicted RBP21.57■■□□□ 1.04
NUP88-203ENST00000572019 USTQ9Y2C2 406 aa21.57■■□□□ 1.04
NUP88-203ENST00000572019 N4BP1O75113 896 aaKnown RBP21.56■■□□□ 1.04
NUP88-203ENST00000572019 CNPP09543 421 aaKnown RBP21.56■■□□□ 1.04
NUP88-203ENST00000572019 USP11P51784 963 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 CCT2P78371 535 aaKnown RBP21.56■■□□□ 1.04
NUP88-203ENST00000572019 GLB1LQ6UWU2 654 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 ANO5Q75V66 913 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 GPR149Q86SP6 731 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 CABP7Q86V35 215 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 FLCNQ8NFG4 579 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 KLHL5Q96PQ7 755 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 IFT122Q9HBG6 1241 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 CYP26B1Q9NR63 512 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 SNX14Q9Y5W7 946 aa21.56■■□□□ 1.04
NUP88-203ENST00000572019 TDRD15B5MCY1 1934 aaKnown RBP21.55■■□□□ 1.04
NUP88-203ENST00000572019 EML1O00423 815 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 NARSO43776 548 aaKnown RBP21.55■■□□□ 1.04
NUP88-203ENST00000572019 LILRB3O75022 631 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 MYBP10242 640 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 SFPQP23246 707 aaKnown RBP eCLIP21.55■■□□□ 1.04
NUP88-203ENST00000572019 CLCN4P51793 760 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 XKR3Q5GH77 459 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 ETNPPLQ8TBG4 499 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 RNF26Q9BY78 433 aaPredicted RBP21.55■■□□□ 1.04
NUP88-203ENST00000572019 MFSD1Q9H3U5 465 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 MINDY3Q9H8M7 445 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 PCDHB2Q9Y5E7 798 aa21.55■■□□□ 1.04
NUP88-203ENST00000572019 DDX11L8A8MPP1 907 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 ZNF623O75123 536 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 MAFO75444 373 aaPredicted RBP21.54■■□□□ 1.04
NUP88-203ENST00000572019 HMGB1P09429 215 aaKnown RBP21.54■■□□□ 1.04
NUP88-203ENST00000572019 CLCN5P51795 746 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 NPEPPSP55786 919 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 RNASELQ05823 741 aaKnown RBP21.54■■□□□ 1.04
NUP88-203ENST00000572019 NPY5RQ15761 445 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 Q4G0T1 1027 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 UBXN11Q5T124 520 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 TAS1R1Q7RTX1 841 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 CATSPER4Q7RTX7 472 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 PLCD3Q8N3E9 789 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 TMEM87AQ8NBN3 555 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 BICD2Q8TD16 824 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 AIFM3Q96NN9 605 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 AGXT2Q9BYV1 514 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 SFXN1Q9H9B4 322 aa21.54■■□□□ 1.04
NUP88-203ENST00000572019 WRAP73Q9P2S5 460 aaPredicted RBP21.54■■□□□ 1.04
NUP88-203ENST00000572019 MTCL1Q9Y4B5 1905 aaKnown RBP21.54■■□□□ 1.04
NUP88-203ENST00000572019 M0R2N6 131 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 IFNAR1P17181 557 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 BMS1Q14692 1282 aaKnown RBP21.53■■□□□ 1.04
NUP88-203ENST00000572019 ZNF410Q86VK4 478 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 CCDC148Q8NFR7 591 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 RSAD2Q8WXG1 361 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 KCNK12Q9HB15 430 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 BMP2KQ9NSY1 1161 aaPredicted RBP21.53■■□□□ 1.04
NUP88-203ENST00000572019 AGPAT5Q9NUQ2 364 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 MARCH5Q9NX47 278 aa21.53■■□□□ 1.04
NUP88-203ENST00000572019 CYP3A7-CYP3A51PA0A087WV96 503 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 F8W810 466 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 SLC37A4O43826 429 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 POMCP01189 267 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 RPS6KB1P23443 525 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 CYP3A7P24462 503 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 KLRC2P26717 231 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 PDIA3P30101 505 aaKnown RBP21.52■■□□□ 1.04
NUP88-203ENST00000572019 HOXA11P31270 313 aaPredicted RBP21.52■■□□□ 1.04
NUP88-203ENST00000572019 HSPA4P34932 840 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 NLRP5P59047 1200 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 AKAP17AQ02040 695 aaKnown RBP21.52■■□□□ 1.04
NUP88-203ENST00000572019 GIT2Q14161 759 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 BLOC1S2Q6QNY1 142 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 CCDC149Q6ZUS6 474 aa21.52■■□□□ 1.04
NUP88-203ENST00000572019 RDM1Q8NG50 284 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms