RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 GLULP15104 373 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 MAGEA9P43362 315 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 PHKA2P46019 1235 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 STARD6P59095 220 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 ZBTB41Q5SVQ8 909 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 CASC1Q6TDU7 716 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 CHD1LQ86WJ1 897 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 MAML2Q8IZL2 1156 aaPredicted RBP12.53□□□□□ -0.4
VPS53-207ENST00000570510 ZNF654Q8IZM8 581 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 NETO1Q8TDF5 533 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 LPPQ93052 612 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 FAM167AQ96KS9 214 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 MAP3K14Q99558 947 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 GCOM2Q9BZD3 368 aaPredicted RBP12.53□□□□□ -0.4
VPS53-207ENST00000570510 ADAMTS10Q9H324 1103 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 CHST12Q9NRB3 414 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 RALYQ9UKM9 306 aaKnown RBP12.53□□□□□ -0.4
VPS53-207ENST00000570510 FAN1Q9Y2M0 1017 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 NUMBLQ9Y6R0 609 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 LAMA4Q16363 1823 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 CFAP47Q6ZTR5 3102 aa12.53□□□□□ -0.4
VPS53-207ENST00000570510 hCG_1642624A0A1W2PR95 340 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 CCDC69A6NI79 296 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 PSAPP07602 524 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 SFPQP23246 707 aaKnown RBP eCLIP12.52□□□□□ -0.41
VPS53-207ENST00000570510 SLC11A1P49279 550 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 CDC42EP1Q00587 391 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 CMTR1Q8N1G2 835 aaKnown RBP12.52□□□□□ -0.41
VPS53-207ENST00000570510 ST13P5Q8NFI4 369 aaPredicted RBP12.52□□□□□ -0.41
VPS53-207ENST00000570510 BCL7CQ8WUZ0 217 aaPredicted RBP12.52□□□□□ -0.41
VPS53-207ENST00000570510 PGBD4Q96DM1 585 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 EPC1Q9H2F5 836 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 SH2B1Q9NRF2 756 aaPredicted RBP12.52□□□□□ -0.41
VPS53-207ENST00000570510 NRBP2Q9NSY0 501 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 DNAJB4Q9UDY4 337 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 ANGPTL2Q9UKU9 493 aa12.52□□□□□ -0.41
VPS53-207ENST00000570510 PIN4Q9Y237 131 aaKnown RBP12.52□□□□□ -0.41
VPS53-207ENST00000570510 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 IPO5O00410 1097 aaKnown RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 MEIS1O00470 390 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 CSDE1O75534 798 aaKnown RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 RFPL2O75678 378 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 PLEKHA8P1O95397 391 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 SPATA31D3P0C874 917 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 DNM2P50570 870 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 RAB27AP51159 221 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 GPC3P51654 580 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 NAPAP54920 295 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 GPC5P78333 572 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 PFKPQ01813 784 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 PRKCQQ04759 706 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 SPEM2Q0P670 501 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 HTR4Q13639 388 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 PPP2R5DQ14738 602 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 MLF2Q15773 248 aaPredicted RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 SLC44A4Q53GD3 710 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 SPATA31D4Q6ZUB0 917 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 PLA2G4DQ86XP0 818 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 SRBD1Q8N5C6 995 aaKnown RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 DDX1Q92499 740 aaKnown RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 PGBD1Q96JS3 809 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 INO80BQ9C086 356 aaPredicted RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 TBC1D22BQ9NU19 505 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 KANSL3Q9P2N6 904 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 GABBR1Q9UBS5 961 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 ZFP37Q9Y6Q3 630 aaPredicted RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 MAP1BP46821 2468 aaKnown RBP12.51□□□□□ -0.41
VPS53-207ENST00000570510 DENND4AQ7Z401 1863 aa12.51□□□□□ -0.41
VPS53-207ENST00000570510 GPR179Q6PRD1 2367 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 TEX28O15482 410 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 GAS2O43903 313 aaKnown RBP12.5□□□□□ -0.41
VPS53-207ENST00000570510 NR1I2O75469 434 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 SOD2P04179 222 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 CALM1P0DP23 149 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 CALM2P0DP24 149 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 CALM3P0DP25 149 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 ATP4AP20648 1035 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 NRLP54845 237 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 LPAL2Q16609 132 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 B4GALNT3Q6L9W6 998 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 PRR23BQ6ZRT6 265 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 PALB2Q86YC2 1186 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 ZNF280BQ86YH2 543 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 SMAP1Q8IYB5 467 aaPredicted RBP12.5□□□□□ -0.41
VPS53-207ENST00000570510 TMTC2Q8N394 836 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 ZBTB44Q8NCP5 570 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 RPS6KC1Q96S38 1066 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 NELL2Q99435 816 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 ZNF577Q9BSK1 485 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 FAM126AQ9BYI3 521 aaPredicted RBP12.5□□□□□ -0.41
VPS53-207ENST00000570510 ANO3Q9BYT9 981 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 RHOBTB2Q9BYZ6 727 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 OSBPL6Q9BZF3 934 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 PLEKHA4Q9H4M7 779 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 LY9Q9HBG7 655 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 FAM105AQ9NUU6 356 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 PCDHA10Q9Y5I2 948 aa12.5□□□□□ -0.41
VPS53-207ENST00000570510 MAFBQ9Y5Q3 323 aaPredicted RBP12.5□□□□□ -0.41
VPS53-207ENST00000570510 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.5□□□□□ -0.41
VPS53-207ENST00000570510 EVPLQ92817 2033 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms