RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 GALTP07902 379 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 ZNF806P0C7X5 589 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 ZNF852Q6ZMS4 543 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 ZNF687Q8N1G0 1237 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 STAG2Q8N3U4 1231 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 GPRASP2Q96D09 838 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 BBC3Q96PG8 261 aaPredicted RBP12.86□□□□□ -0.35
CDH3-208ENST00000569036 AZI2Q9H6S1 392 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 NRDE2Q9H7Z3 1164 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 MRPL17Q9NRX2 175 aaKnown RBP12.86□□□□□ -0.35
CDH3-208ENST00000569036 PKD2L1Q9P0L9 805 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 DPP7Q9UHL4 492 aa12.86□□□□□ -0.35
CDH3-208ENST00000569036 BAZ2BQ9UIF8 2168 aaKnown RBP12.86□□□□□ -0.35
CDH3-208ENST00000569036 KALRNO60229 2985 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 CHURC1-FNTBB4DL54 471 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 GPR32O75388 356 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 ADH1AP07327 375 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 ZSCAN20P17040 1043 aaPredicted RBP12.85□□□□□ -0.35
CDH3-208ENST00000569036 SLC11A1P49279 550 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 FNTBP49356 437 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 CCR3P51677 355 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 HAND2P61296 217 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 MTSS1LQ765P7 747 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 GPATCH3Q96I76 525 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 CCDC136Q96JN2 1154 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 IER2Q9BTL4 223 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 NT5C3AQ9H0P0 336 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 ARRDC1-AS1Q9H2J1 176 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 DNAJB4Q9UDY4 337 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 CDH7Q9ULB5 785 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 MRPS17Q9Y2R5 130 aaKnown RBP12.85□□□□□ -0.35
CDH3-208ENST00000569036 GPSM3Q9Y4H4 160 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 CELSR3Q9NYQ7 3312 aa12.85□□□□□ -0.35
CDH3-208ENST00000569036 A0A0U1RQF3 1178 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 C2CD2LO14523 706 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 TEX28O15482 410 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 B4GALT3O60512 393 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 FGAP02671 866 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 VTNP04004 478 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 FSHRP23945 695 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 CNR2P34972 360 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 SATB1Q01826 763 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 B4GALNT3Q6L9W6 998 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 C19orf48Q6RUI8 117 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 HOMER1Q86YM7 354 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 TBC1D10CQ8IV04 446 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 CDHR1Q96JP9 859 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 KXD1Q9BQD3 176 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 IGSF5Q9NSI5 407 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 TBC1D13Q9NVG8 400 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 NEDD4P46934 1319 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 TICRRQ7Z2Z1 1910 aa12.84□□□□□ -0.35
CDH3-208ENST00000569036 AXIN1O15169 862 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 SPATA31D3P0C874 917 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 PCP11498 1178 aaKnown RBP12.83□□□□□ -0.36
CDH3-208ENST00000569036 ITGB5P18084 799 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 AK2P54819 239 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 IRX6P78412 446 aaPredicted RBP12.83□□□□□ -0.36
CDH3-208ENST00000569036 MFSD6Q6ZSS7 791 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 SPATA31D4Q6ZUB0 917 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 PLPPR4Q7Z2D5 763 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 LURAP1LQ8IV03 231 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 RPS6KC1Q96S38 1066 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 PRKD2Q9BZL6 878 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 JPH1Q9HDC5 661 aaPredicted RBP12.83□□□□□ -0.36
CDH3-208ENST00000569036 HEBP1Q9NRV9 189 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 ZDHHC7Q9NXF8 308 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 CACNA2D2Q9NY47 1150 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 STK39Q9UEW8 545 aa12.83□□□□□ -0.36
CDH3-208ENST00000569036 ZBTB47Q9UFB7 747 aaPredicted RBP12.83□□□□□ -0.36
CDH3-208ENST00000569036 NDRG2Q9UN36 371 aaKnown RBP12.83□□□□□ -0.36
CDH3-208ENST00000569036 KLRF2D3W0D1 207 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 URODP06132 367 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 STAT5BP51692 787 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 TRAF1Q13077 416 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 SLC35G1Q2M3R5 365 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 RNF43Q68DV7 783 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 CEP68Q76N32 757 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 LONP2Q86WA8 852 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 PANK1Q8TE04 598 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 HDAC7Q8WUI4 952 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 RSPH1Q8WYR4 309 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 ESR2Q92731 530 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 PHF20Q9BVI0 1012 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 GBP3Q9H0R5 595 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 SMOC1Q9H4F8 434 aa12.82□□□□□ -0.36
CDH3-208ENST00000569036 EIF4E1BA6NMX2 242 aaKnown RBP12.81□□□□□ -0.36
CDH3-208ENST00000569036 ZBTB42B2RXF5 422 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 EPN2O95208 641 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 CXCL12P48061 93 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 RNASELQ05823 741 aaKnown RBP12.81□□□□□ -0.36
CDH3-208ENST00000569036 MTMR1Q13613 665 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 COL28A1Q2UY09 1125 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 CCDC178Q5BJE1 867 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 NOMO2Q5JPE7 1267 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 SH3PXD2AQ5TCZ1 1133 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 ENAHQ8N8S7 591 aaPredicted RBP12.81□□□□□ -0.36
CDH3-208ENST00000569036 FGF13Q92913 245 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 PIGSQ96S52 555 aa12.81□□□□□ -0.36
CDH3-208ENST00000569036 PLEKHA4Q9H4M7 779 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms