RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 IL17AQ16552 155 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 ABI1Q8IZP0 508 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 CCDC43Q96MW1 224 aaKnown RBP20.45■□□□□ 0.86
CLN3-237ENST00000569030 NECAB3Q96P71 396 aaPredicted RBP20.45■□□□□ 0.86
CLN3-237ENST00000569030 NACC1Q96RE7 527 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 AAASQ9NRG9 546 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 FAM105AQ9NUU6 356 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 DBR1Q9UK59 544 aaKnown RBP20.45■□□□□ 0.86
CLN3-237ENST00000569030 SMC3Q9UQE7 1217 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 C5orf42Q9H799 3197 aa20.45■□□□□ 0.86
CLN3-237ENST00000569030 USO1O60763 962 aaKnown RBP20.44■□□□□ 0.86
CLN3-237ENST00000569030 GLRA2P23416 452 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 GTF2F1P35269 517 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-237ENST00000569030 PTENP60484 403 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 HYAL1Q12794 435 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 CAPSQ13938 189 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 MAEAQ7L5Y9 396 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 ERMNQ8TAM6 284 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 UHRF1Q96T88 793 aaPredicted RBP20.44■□□□□ 0.86
CLN3-237ENST00000569030 POLR3FQ9H1D9 316 aaPredicted RBP20.44■□□□□ 0.86
CLN3-237ENST00000569030 GPRC5CQ9NQ84 441 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 EIF4ENIF1Q9NRA8 985 aaKnown RBP20.44■□□□□ 0.86
CLN3-237ENST00000569030 PCDHGC5Q9Y5F6 944 aa20.44■□□□□ 0.86
CLN3-237ENST00000569030 H3BQV1 296 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 ZNF623O75123 536 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 FGF18O76093 207 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 LAG3P18627 525 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 PBX3P40426 434 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 PDIA5Q14554 519 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 UBXN11Q5T124 520 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 LRRC43Q8N309 656 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 IGSF22Q8N9C0 903 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 PABPC5Q96DU9 382 aaKnown RBP20.43■□□□□ 0.86
CLN3-237ENST00000569030 LRWD1Q9UFC0 647 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 PCDHB2Q9Y5E7 798 aa20.43■□□□□ 0.86
CLN3-237ENST00000569030 SKIP12755 728 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 LTBRP36941 435 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 CCT6AP40227 531 aaKnown RBP20.42■□□□□ 0.86
CLN3-237ENST00000569030 POU5F1BQ06416 359 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 TFDP1Q14186 410 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 LEXMQ3ZCV2 418 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 KCNT2Q6UVM3 1135 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 ADGRD2Q7Z7M1 963 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 IFNLR1Q8IU57 520 aaPredicted RBP20.42■□□□□ 0.86
CLN3-237ENST00000569030 THNSL1Q8IYQ7 743 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.42■□□□□ 0.86
CLN3-237ENST00000569030 IGFLR1Q9H665 355 aa20.42■□□□□ 0.86
CLN3-237ENST00000569030 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.42■□□□□ 0.86
CLN3-237ENST00000569030 PP2D1A8MPX8 630 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 H3BQ06 376 aaPredicted RBP20.41■□□□□ 0.86
CLN3-237ENST00000569030 TSPAN1O60635 241 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 RAB27AP51159 221 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 ERVFC1P60507 584 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 UBE3AQ05086 875 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 MBTD1Q05BQ5 628 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 AMHR2Q16671 573 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 CTC1Q2NKJ3 1217 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 RILPL1Q5EBL4 403 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 LARP1BQ659C4 914 aaKnown RBP20.41■□□□□ 0.86
CLN3-237ENST00000569030 PADI6Q6TGC4 694 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 AGMOQ6ZNB7 445 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 EP400NLQ6ZTU2 488 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 MRPL10Q7Z7H8 261 aaKnown RBP20.41■□□□□ 0.86
CLN3-237ENST00000569030 CPB2Q96IY4 423 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 ZNF558Q96NG5 402 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 CLDND1Q9NY35 253 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 KIAA1024Q9UPX6 916 aa20.41■□□□□ 0.86
CLN3-237ENST00000569030 INO80B-WBP1J3KQ70 363 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 TNFRSF10AO00220 468 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 LAD1O00515 517 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 LINC01565O15544 149 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 OFD1O75665 1012 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 ERLIN2O94905 339 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 MUTP22033 750 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 CDC25AP30304 524 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 DLX2Q07687 328 aaPredicted RBP20.4■□□□□ 0.86
CLN3-237ENST00000569030 CUL4AQ13619 759 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 CSPP1Q1MSJ5 1256 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 HAUS3Q68CZ6 603 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 MCPH1Q8NEM0 835 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 POLD4Q9HCU8 107 aa20.4■□□□□ 0.86
CLN3-237ENST00000569030 TDRD15B5MCY1 1934 aaKnown RBP20.39■□□□□ 0.86
CLN3-237ENST00000569030 ARHGEF35A5YM69 484 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 NCK2O43639 380 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 CYP11B2P19099 503 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 PRPHP41219 470 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 PLCB3Q01970 1234 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 PCBP1Q15365 356 aaKnown RBP eCLIP20.39■□□□□ 0.85
CLN3-237ENST00000569030 NOMO2Q5JPE7 1267 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 GLB1LQ6UWU2 654 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 DTHD1Q6ZMT9 781 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 RBM23Q86U06 439 aaKnown RBP20.39■□□□□ 0.85
CLN3-237ENST00000569030 SMG8Q8ND04 991 aaKnown RBP20.39■□□□□ 0.85
CLN3-237ENST00000569030 SNX29Q8TEQ0 813 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 BSNDQ8WZ55 320 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 EIF2AQ9BY44 585 aaKnown RBP20.39■□□□□ 0.85
CLN3-237ENST00000569030 NFKBIZQ9BYH8 718 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 TLR9Q9NR96 1032 aa20.39■□□□□ 0.85
CLN3-237ENST00000569030 DDX19AQ9NUU7 478 aaKnown RBP20.39■□□□□ 0.85
CLN3-237ENST00000569030 INPP5FQ9Y2H2 1132 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms