RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CDC45O75419 566 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 RECQL4O94761 1208 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 POU3F2P20265 443 aaPredicted RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 PTGS2P35354 604 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 STAT3P40763 770 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 GPR15P49685 360 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 INHBCP55103 352 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 DGCR2P98153 550 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 DPTQ07507 201 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 SAFB2Q14151 953 aaKnown RBP eCLIP4.18□□□□□ -1.74
VPS35-207ENST00000568191 MYBPC3Q14896 1274 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 CCDC178Q5BJE1 867 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 GPR158Q5T848 1215 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 NIM1KQ8IY84 436 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 SYNE4Q8N205 404 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 NEU4Q8WWR8 484 aaPredicted RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 RSAD2Q8WXG1 361 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 RTF1Q92541 710 aaKnown RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 RNPC3Q96LT9 517 aaKnown RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 GPHA2Q96T91 129 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 PRRX2Q99811 253 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 FANCLQ9NW38 375 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 THG1LQ9NWX6 298 aaKnown RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 HECAQ9UBI9 543 aaPredicted RBP4.18□□□□□ -1.74
VPS35-207ENST00000568191 HDAC5Q9UQL6 1122 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 PCDHB6Q9Y5E3 794 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 CD2APQ9Y5K6 639 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 MYPNQ86TC9 1320 aa4.18□□□□□ -1.74
VPS35-207ENST00000568191 PCDH8O95206 1070 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 HNRNPLP14866 589 aaKnown RBP eCLIP4.17□□□□□ -1.74
VPS35-207ENST00000568191 IL2P60568 153 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 SPIDRQ14159 915 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 SPTY2D1Q68D10 685 aaPredicted RBP4.17□□□□□ -1.74
VPS35-207ENST00000568191 LMBR1LQ6UX01 489 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 FRMD7Q6ZUT3 714 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 UNC5BQ8IZJ1 945 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 CDYL2Q8N8U2 506 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 ATXN2LQ8WWM7 1075 aaKnown RBP4.17□□□□□ -1.74
VPS35-207ENST00000568191 ST8SIA2Q92186 375 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 ZNF512Q96ME7 567 aaPredicted RBP4.17□□□□□ -1.74
VPS35-207ENST00000568191 FEZ1Q99689 392 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 MENTQ9BUN1 341 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 KRTAP9-8Q9BYQ0 159 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 HAPLN2Q9GZV7 340 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 WNT8AQ9H1J5 351 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 MMRN2Q9H8L6 949 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 MSRAQ9UJ68 235 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 CLCA2Q9UQC9 943 aa4.17□□□□□ -1.74
VPS35-207ENST00000568191 TMEM191CA6NGB0 347 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 SCNN1GP51170 649 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 ACAP1Q15027 740 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 C21orf62-AS1Q17RA5 79 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 ESRP1Q6NXG1 681 aaKnown RBP4.16□□□□□ -1.74
VPS35-207ENST00000568191 APBB1IPQ7Z5R6 666 aaPredicted RBP4.16□□□□□ -1.74
VPS35-207ENST00000568191 NXPE1Q8N323 547 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 ZNF610Q8N9Z0 462 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 GLB1L3Q8NCI6 653 aaPredicted RBP4.16□□□□□ -1.74
VPS35-207ENST00000568191 OR5M3Q8NGP4 307 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 CHTF18Q8WVB6 975 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 HAS1Q92839 578 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 CHFRQ96EP1 664 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 PAWRQ96IZ0 340 aaKnown RBP4.16□□□□□ -1.74
VPS35-207ENST00000568191 GPR101Q96P66 508 aaPredicted RBP4.16□□□□□ -1.74
VPS35-207ENST00000568191 CEP89Q96ST8 783 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 MNTQ99583 582 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 KANSL2Q9H9L4 492 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 CEP72Q9P209 647 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 USP18Q9UMW8 372 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 XDHP47989 1333 aa4.16□□□□□ -1.74
VPS35-207ENST00000568191 A0A087X1B8 175 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 PPFIA2O75334 1257 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 ALDH1A2O94788 518 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 LSSP48449 732 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 WNT3AP56704 352 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 PHC1P78364 1004 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 DSG1Q02413 1049 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 DUSP2Q05923 314 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 RABL3Q5HYI8 236 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 FAM83AQ86UY5 434 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 GLB1L2Q8IW92 636 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 DHX37Q8IY37 1157 aaKnown RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 ELOA2Q8IYF1 753 aaPredicted RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 MB21D1Q8N884 522 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 MDGA1Q8NFP4 955 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 SLC25A43Q8WUT9 341 aaPredicted RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 GAB3Q8WWW8 586 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 CLIP3Q96DZ5 547 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 MFSD3Q96ES6 412 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 CPPED1Q9BRF8 314 aaPredicted RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 SLKQ9H2G2 1235 aaPredicted RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 ZMAT4Q9H898 229 aa4.15□□□□□ -1.75
VPS35-207ENST00000568191 ING1Q9UK53 422 aaPredicted RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 NOC2LQ9Y3T9 749 aaKnown RBP4.15□□□□□ -1.75
VPS35-207ENST00000568191 RAMP2O60895 175 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 GAAP10253 952 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 HSP90B1P14625 803 aaKnown RBP4.14□□□□□ -1.75
VPS35-207ENST00000568191 GYPEP15421 78 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 INHBEP58166 350 aa4.14□□□□□ -1.75
VPS35-207ENST00000568191 DCAF17Q5H9S7 520 aaPredicted RBP4.14□□□□□ -1.75
VPS35-207ENST00000568191 METTL24Q5JXM2 366 aa4.14□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms