RNA–Protein interactions for RNA: ENST00000568169.5

TCF4-238, Transcript of transcription factor 4, human

TSL 5

Gene TCF4, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TCF4-238	ENST00000568169	ACSF2	Q96CM8	615 aa	Predicted RBP	12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	CEP89	Q96ST8	783 aa		12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	RIT2	Q99578	217 aa		12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	VN1R3	Q9BXE9	311 aa		12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	NIFK	Q9BYG3	293 aa	Known RBP	12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	SFXN1	Q9H9B4	322 aa		12.83	□□□□□ -0.36
TCF4-238	ENST00000568169	OTOGL	Q3ZCN5	2332 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169		A0A087WZ62	844 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	IGKV6-21	A0A0C4DH24	114 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	CCDC196	A0A1B0GTZ2	297 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	MEIS3P2	A8K0S8	358 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	PRPF3	O43395	683 aa	Known RBP	12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	PI15	O43692	258 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	GAS7	O60861	476 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	OFD1	O75665	1012 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	STBD1	O95210	358 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	JAK3	P52333	1124 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	TDG	Q13569	410 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	PTPN14	Q15678	1187 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	TWF2	Q6IBS0	349 aa	Known RBP	12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	CCDC149	Q6ZUS6	474 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	CCDC105	Q8IYK2	499 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	ADSSL1	Q8N142	457 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	FLCN	Q8NFG4	579 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	KLHL5	Q96PQ7	755 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	UNC45A	Q9H3U1	944 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	FAM105A	Q9NUU6	356 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	DNAJB4	Q9UDY4	337 aa		12.82	□□□□□ -0.36
TCF4-238	ENST00000568169	B4GALT3	O60512	393 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	LILRB3	O75022	631 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	SFPQ	P23246	707 aa	Known RBP eCLIP	12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	SLC11A1	P49279	550 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	RAB27A	P51159	221 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	USP11	P51784	963 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	CLCN4	P51793	760 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	RNASEL	Q05823	741 aa	Known RBP	12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	LONRF3	Q496Y0	759 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	XKR3	Q5GH77	459 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	LRCH2	Q5VUJ6	765 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	ZNF410	Q86VK4	478 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	RDM1	Q8NG50	284 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	BICD2	Q8TD16	824 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	CCDC136	Q96JN2	1154 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	RTP3	Q9BQQ7	232 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	TEKT3	Q9BXF9	490 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	INO80B	Q9C086	356 aa	Predicted RBP	12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	KCNK12	Q9HB15	430 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	DUSP12	Q9UNI6	340 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	INPP5F	Q9Y2H2	1132 aa		12.81	□□□□□ -0.36
TCF4-238	ENST00000568169	MIA3	Q5JRA6	1907 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	CEP250	Q9BV73	2442 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	TMEM150B	A6NC51	233 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	CHMP2A	O43633	222 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	PSMD10	O75832	226 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	CNP	P09543	421 aa	Known RBP	12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	ID4	P47928	161 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	DNM2	P50570	870 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	KRT32	Q14532	448 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	LETM2	Q2VYF4	491 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	MTERF2	Q49AM1	385 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	B3GNT9	Q6UX72	402 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	C15orf39	Q6ZRI6	1047 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	ZNF280B	Q86YH2	543 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	DTWD2	Q8NBA8	298 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	GJA10	Q969M2	543 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	EMILIN2	Q9BXX0	1053 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	IGSF9	Q9P2J2	1179 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	STK39	Q9UEW8	545 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	SEPT9	Q9UHD8	586 aa	Predicted RBP	12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	NAP1L2	Q9ULW6	460 aa	Predicted RBP	12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	PIN4	Q9Y237	131 aa	Known RBP	12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	ARID2	Q68CP9	1835 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	NID2	Q14112	1375 aa		12.8	□□□□□ -0.36
TCF4-238	ENST00000568169	MAF	O75444	373 aa	Predicted RBP	12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	DDHD2	O94830	711 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	HMGB1	P09429	215 aa	Known RBP	12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	KLRC2	P26717	231 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	ANGPT1	Q15389	498 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	NTRK3	Q16288	839 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	AGMO	Q6ZNB7	445 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	CATSPER4	Q7RTX7	472 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	MIER3	Q7Z3K6	550 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	MRPL10	Q7Z7H8	261 aa	Known RBP	12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	RHPN2	Q8IUC4	686 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	SIX5	Q8N196	739 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	CCDC148	Q8NFR7	591 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	CMAS	Q8NFW8	434 aa	Predicted RBP	12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	PGBD4	Q96DM1	585 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	YTHDC1	Q96MU7	727 aa	Known RBP	12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	SH2D3A	Q9BRG2	576 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	TMEM175	Q9BSA9	504 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	GBP3	Q9H0R5	595 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	FBXL21	Q9UKT6	434 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	PCDHB2	Q9Y5E7	798 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	MYH15	Q9Y2K3	1946 aa		12.79	□□□□□ -0.36
TCF4-238	ENST00000568169	N4BP1	O75113	896 aa	Known RBP	12.78	□□□□□ -0.36
TCF4-238	ENST00000568169	ALDH2	P05091	517 aa		12.78	□□□□□ -0.36
TCF4-238	ENST00000568169	SSB	P05455	408 aa	Known RBP eCLIP	12.78	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms