RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 TNFRSF25Q93038 417 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 LPPQ93052 612 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 PHF7Q9BWX1 381 aaPredicted RBP17.99■□□□□ 0.47
CLN3-229ENST00000567963 RGL1Q9NZL6 768 aa17.99■□□□□ 0.47
CLN3-229ENST00000567963 WDFY4Q6ZS81 3184 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 FAM205CA6NFA0 338 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 NT5C1B-RDH14C9J2C7 533 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 BAG4O95429 457 aaKnown RBP17.98■□□□□ 0.47
CLN3-229ENST00000567963 LARGE1O95461 756 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 SRGAP2BP0DMP2 458 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 RFC5P40937 340 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 TECP42680 631 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 CBX2Q14781 532 aaPredicted RBP17.98■□□□□ 0.47
CLN3-229ENST00000567963 LONRF3Q496Y0 759 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 NCAPH2Q6IBW4 605 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 ANKRD54Q6NXT1 300 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 OTUD6AQ7L8S5 288 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 MRPL43Q8N983 215 aaKnown RBP17.98■□□□□ 0.47
CLN3-229ENST00000567963 GTF3C6Q969F1 213 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 TMEM143Q96AN5 459 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 DYDC2Q96IM9 177 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 S1PR5Q9H228 398 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 ZSWIM4Q9H7M6 989 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 BRMS1Q9HCU9 246 aa17.98■□□□□ 0.47
CLN3-229ENST00000567963 MEIS3P2A8K0S8 358 aa17.97■□□□□ 0.47
CLN3-229ENST00000567963 SRGAP2CP0DJJ0 459 aa17.97■□□□□ 0.47
CLN3-229ENST00000567963 RAB27AP51159 221 aa17.97■□□□□ 0.47
CLN3-229ENST00000567963 SMC1AQ14683 1233 aaKnown RBP17.97■□□□□ 0.47
CLN3-229ENST00000567963 SRGAP1Q7Z6B7 1085 aa17.97■□□□□ 0.47
CLN3-229ENST00000567963 PSPC1Q8WXF1 523 aaKnown RBP17.97■□□□□ 0.47
CLN3-229ENST00000567963 AGPAT5Q9NUQ2 364 aa17.97■□□□□ 0.47
CLN3-229ENST00000567963 C2orf71A6NGG8 1288 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 ZBTB39O15060 712 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 GAS2O43903 313 aaKnown RBP17.96■□□□□ 0.47
CLN3-229ENST00000567963 ZC3H11AO75152 810 aaKnown RBP eCLIP17.96■□□□□ 0.47
CLN3-229ENST00000567963 OFD1O75665 1012 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 SLITRK3O94933 977 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 CYP4A11Q02928 519 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 LAMTOR4Q0VGL1 99 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 CTTNQ14247 550 aaKnown RBP17.96■□□□□ 0.47
CLN3-229ENST00000567963 ERICH6BQ5W0A0 696 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 LLGL2Q6P1M3 1020 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 SYCE2Q6PIF2 218 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 GLB1LQ6UWU2 654 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 NSUN7Q8NE18 718 aaKnown RBP17.96■□□□□ 0.47
CLN3-229ENST00000567963 TCP11Q8WWU5 503 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 EDAQ92838 391 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 TMEM169Q96HH4 297 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 MINDY3Q9H8M7 445 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 TBC1D13Q9NVG8 400 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 PCDHA12Q9UN75 941 aa17.96■□□□□ 0.47
CLN3-229ENST00000567963 CARNS1A5YM72 827 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 ASAP2O43150 1006 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 HOXB8P17481 243 aaPredicted RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 HOXA11P31270 313 aaPredicted RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 XKR9Q5GH70 373 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 NOMO2Q5JPE7 1267 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 HFE2Q6ZVN8 426 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 FERMT3Q86UX7 667 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 TMEM173Q86WV6 379 aaPredicted RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 TPH2Q8IWU9 490 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 PGBD4Q96DM1 585 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 RPGRIP1Q96KN7 1286 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 NRDE2Q9H7Z3 1164 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 BMP2KQ9NSY1 1161 aaPredicted RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 PCDHB2Q9Y5E7 798 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 BTBD18B2RXH4 712 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 CXCL14O95715 111 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 GALTP07902 379 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 NEK4P51957 841 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 BMS1Q14692 1282 aaKnown RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 EMC2Q15006 297 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 MRPL10Q7Z7H8 261 aaKnown RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 VPS52Q8N1B4 723 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 CASP10Q92851 521 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 IGSF21Q96ID5 467 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 HSD17B14Q9BPX1 270 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 EIF2AK1Q9BQI3 630 aaKnown RBP17.95■□□□□ 0.46
CLN3-229ENST00000567963 INPP5FQ9Y2H2 1132 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 HCFC2Q9Y5Z7 792 aa17.95■□□□□ 0.46
CLN3-229ENST00000567963 RNASELQ05823 741 aaKnown RBP17.94■□□□□ 0.46
CLN3-229ENST00000567963 CALCRLQ16602 461 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 AGMOQ6ZNB7 445 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 DDX53Q86TM3 631 aaKnown RBP17.94■□□□□ 0.46
CLN3-229ENST00000567963 RNF149Q8NC42 400 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 MTRQ99707 1265 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 APOL5Q9BWW9 433 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 ZBP1Q9H171 429 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 TTC12Q9H892 705 aaPredicted RBP17.94■□□□□ 0.46
CLN3-229ENST00000567963 IRAK3Q9Y616 596 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 ARID2Q68CP9 1835 aa17.94■□□□□ 0.46
CLN3-229ENST00000567963 JAK2O60674 1132 aa17.93■□□□□ 0.46
CLN3-229ENST00000567963 EIF5BO60841 1220 aaKnown RBP17.93■□□□□ 0.46
CLN3-229ENST00000567963 CLASP2O75122 1294 aaKnown RBP17.93■□□□□ 0.46
CLN3-229ENST00000567963 LYPLA2O95372 231 aa17.93■□□□□ 0.46
CLN3-229ENST00000567963 HOXD11P31277 338 aaPredicted RBP17.93■□□□□ 0.46
CLN3-229ENST00000567963 UBXN11Q5T124 520 aa17.93■□□□□ 0.46
CLN3-229ENST00000567963 ZNF280BQ86YH2 543 aa17.93■□□□□ 0.46
CLN3-229ENST00000567963 DIS3L2Q8IYB7 885 aaKnown RBP17.93■□□□□ 0.46
CLN3-229ENST00000567963 XPNPEP1Q9NQW7 623 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms