RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 FAM173BQ6P4H8 233 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 KCNT2Q6UVM3 1135 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 TEX2Q8IWB9 1127 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 MRPL43Q8N983 215 aaKnown RBP12.72□□□□□ -0.37
CLN3-226ENST00000567160 TBCKQ8TEA7 893 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 ADAM2Q99965 735 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 RGS18Q9NS28 235 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 TMEM161AQ9NX61 479 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 SPG21Q9NZD8 308 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 CHMP5Q9NZZ3 219 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 CIZ1Q9ULV3 898 aaPredicted RBP12.72□□□□□ -0.37
CLN3-226ENST00000567160 PCDHA2Q9Y5H9 948 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 WDR81Q562E7 1941 aa12.72□□□□□ -0.37
CLN3-226ENST00000567160 C2orf71A6NGG8 1288 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 CLASP2O75122 1294 aaKnown RBP12.71□□□□□ -0.37
CLN3-226ENST00000567160 RPS6KA5O75582 802 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 WEE2P0C1S8 567 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 INSRRP14616 1297 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 TBC1D8BQ0IIM8 1120 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 TMEM266Q2M3C6 531 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 PCNX4Q63HM2 1172 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 CCDC149Q6ZUS6 474 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 BRAPQ7Z569 592 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 ABI1Q8IZP0 508 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 LRRC43Q8N309 656 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 RIN2Q8WYP3 895 aaPredicted RBP12.71□□□□□ -0.37
CLN3-226ENST00000567160 BORCS6Q96GS4 357 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 TMEM117Q9H0C3 514 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 ZSCAN16Q9H4T2 348 aaPredicted RBP12.71□□□□□ -0.37
CLN3-226ENST00000567160 AZI2Q9H6S1 392 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 ELAC1Q9H777 363 aaKnown RBP12.71□□□□□ -0.37
CLN3-226ENST00000567160 IGSF9Q9P2J2 1179 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 HCSTQ9UBK5 93 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 WNT16Q9UBV4 365 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 NOL7Q9UMY1 257 aaKnown RBP12.71□□□□□ -0.37
CLN3-226ENST00000567160 TELO2Q9Y4R8 837 aa12.71□□□□□ -0.37
CLN3-226ENST00000567160 CHD6Q8TD26 2715 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 SMIM35A0A1B0GVV1 85 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 C9IYK1 514 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 GPR182O15218 404 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 KINO60870 393 aaKnown RBP12.7□□□□□ -0.38
CLN3-226ENST00000567160 FGFR1P11362 822 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 SREBF1P36956 1147 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 LETM2Q2VYF4 491 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 NEK8Q86SG6 692 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 DCLK2Q8N568 766 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 SECISBP2LQ93073 1101 aaKnown RBP12.7□□□□□ -0.38
CLN3-226ENST00000567160 GPRASP2Q96D09 838 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 KCNK12Q9HB15 430 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 CDV3Q9UKY7 258 aaKnown RBP12.7□□□□□ -0.38
CLN3-226ENST00000567160 GINS2Q9Y248 185 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 CFAP47Q6ZTR5 3102 aa12.7□□□□□ -0.38
CLN3-226ENST00000567160 GSTTP1A0A1W2PQM5 241 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 SPDYE4A6NLX3 237 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 PRR5-ARHGAP8B1AHC4 643 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 WNT7AO00755 349 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 MGEA5O60502 916 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 SP9P0CG40 484 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 ZNF76P36508 570 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 ARHGAP8P85298 464 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 GIT2Q14161 759 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 NBR1Q14596 966 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 CABP7Q86V35 215 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 C12orf76Q8N812 135 aaPredicted RBP12.69□□□□□ -0.38
CLN3-226ENST00000567160 ZBTB10Q96DT7 871 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 NCDNQ9UBB6 729 aa12.69□□□□□ -0.38
CLN3-226ENST00000567160 CHD8Q9HCK8 2581 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 EDIL3O43854 480 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 CCNT1O60563 726 aaKnown RBP12.68□□□□□ -0.38
CLN3-226ENST00000567160 TDP2O95551 362 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 KCNA2P16389 499 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 TOB1P50616 345 aaPredicted RBP12.68□□□□□ -0.38
CLN3-226ENST00000567160 LMNB2Q03252 620 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 ZNF174Q15697 407 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 TTC38Q5R3I4 469 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 C1orf210Q8IVY1 113 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 CRYGNQ8WXF5 182 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 CHAMP1Q96JM3 812 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 SFXN1Q9H9B4 322 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 ST3GAL5Q9UNP4 418 aa12.68□□□□□ -0.38
CLN3-226ENST00000567160 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 CARNS1A5YM72 827 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CXCL14O95715 111 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CFHP08603 1231 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CYP3A4P08684 503 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 MCM7P33993 719 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 PBX3P40426 434 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 USP11P51784 963 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 ATXN1P54253 815 aaKnown RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 FAM189BP81408 668 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CEBPZQ03701 1054 aaKnown RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 RILPL1Q5EBL4 403 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 SPECC1Q5M775 1068 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 VARS2Q5ST30 1063 aaKnown RBP12.67□□□□□ -0.38
CLN3-226ENST00000567160 TMC5Q6UXY8 1006 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 PPFIBP1Q86W92 1011 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 SUMF1Q8NBK3 374 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 TMEM169Q96HH4 297 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 CASD1Q96PB1 797 aa12.67□□□□□ -0.38
CLN3-226ENST00000567160 RTKNQ9BST9 563 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms