RNA–Protein interactions for RNA: ENST00000566779.1

GTF3C1-206, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 3

Gene GTF3C1, Length 645 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-206ENST00000566779 PSPC1Q8WXF1 523 aaKnown RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 ZNF689Q96CS4 500 aaPredicted RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 UHRF1Q96T88 793 aaPredicted RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 MTRQ99707 1265 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 EIF2AK1Q9BQI3 630 aaKnown RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 JPH2Q9BR39 696 aaPredicted RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 LLPHQ9BRT6 129 aaKnown RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 TMEM60Q9H2L4 133 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 NSUN3Q9H649 340 aaKnown RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 ZSWIM4Q9H7M6 989 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 UBE2ZQ9H832 354 aaPredicted RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 TMEM161AQ9NX61 479 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 CLDND1Q9NY35 253 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 LMCD1Q9NZU5 365 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 NOL7Q9UMY1 257 aaKnown RBP11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 COG5Q9UP83 839 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 INPP5FQ9Y2H2 1132 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 COL4A3BPQ9Y5P4 624 aa11.29□□□□□ -0.6
GTF3C1-206ENST00000566779 USO1O60763 962 aaKnown RBP11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 MAFO75444 373 aaPredicted RBP11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 OR52Z1P0C646 297 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 PBX3P40426 434 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 RFC5P40937 340 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 TECP42680 631 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 RBM25P49756 843 aaKnown RBP11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 SPIRE1Q08AE8 756 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 OTUD6AQ7L8S5 288 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 ZNF454Q8N9F8 522 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 KLHL23Q8NBE8 558 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 HELQQ8TDG4 1101 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 MICAL1Q8TDZ2 1067 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 LPPQ93052 612 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 ZDHHC16Q969W1 377 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 PCDHB12Q9Y5F1 795 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 PCDHGC5Q9Y5F6 944 aa11.28□□□□□ -0.6
GTF3C1-206ENST00000566779 ITGB1P05556 798 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 RB1P06400 928 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 LINC00271P0C7V0 271 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 LIG1P18858 919 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 GTF2F1P35269 517 aaKnown RBP eCLIP11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 LAMTOR4Q0VGL1 99 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 DSC3Q14574 896 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 RBM23Q86U06 439 aaKnown RBP11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 ZNF410Q86VK4 478 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 ECHDC2Q86YB7 292 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 NOSTRINQ8IVI9 506 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 C4orf19Q8IY42 314 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 LRRC43Q8N309 656 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 RNF149Q8NC42 400 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 ERMNQ8TAM6 284 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 PIGOQ8TEQ8 1089 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 CLP1Q92989 425 aaKnown RBP11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 CEP89Q96ST8 783 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 GBP3Q9H0R5 595 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 AAASQ9NRG9 546 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 TYW1Q9NV66 732 aaKnown RBP11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 DACT1Q9NYF0 836 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 ADGRG1Q9Y653 693 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 REV3LO60673 3130 aa11.27□□□□□ -0.61
GTF3C1-206ENST00000566779 IGKV6-21A0A0C4DH24 114 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 C5orf67F2Z3F1 127 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 H3BQV1 296 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 INO80B-WBP1J3KQ70 363 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TNFRSF10AO00220 468 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 HOXA2O43364 376 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 ERLIN2O94905 339 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 CD2BP2O95400 341 aaKnown RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 LAG3P18627 525 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 DNAJB1P25685 340 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 IRS1P35568 1242 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 PHKA2P46019 1235 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 ZRSR1Q15695 479 aaKnown RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 CLLU1OSQ5K130 101 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 POTEGQ6S5H5 508 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 COLGALT1Q8NBJ5 622 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TTC13Q8NBP0 860 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 FBXO18Q8NFZ0 1043 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 NEK9Q8TD19 979 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 POF1BQ8WVV4 589 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TCP11Q8WWU5 503 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 PRPF31Q8WWY3 499 aaKnown RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TMX3Q96JJ7 454 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 APOL6Q9BWW8 343 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 PLVAPQ9BX97 442 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 INO80BQ9C086 356 aaPredicted RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TMEM117Q9H0C3 514 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 POLR3FQ9H1D9 316 aaPredicted RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 FOXP1Q9H334 677 aaPredicted RBP11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 PLAGL2Q9UPG8 496 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 KIF3AQ9Y496 699 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 TRIP11Q15643 1979 aa11.26□□□□□ -0.61
GTF3C1-206ENST00000566779 MYH15Q9Y2K3 1946 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 ZC3H11AO75152 810 aaKnown RBP eCLIP11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 MED24O75448 989 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 SLITRK3O94933 977 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 NUDT7P0C024 238 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 GJB2P29033 226 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 CCT6AP40227 531 aaKnown RBP11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 NRIP1P48552 1158 aa11.25□□□□□ -0.61
GTF3C1-206ENST00000566779 NDUFV1P49821 464 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms