RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 BCAR1P56945 870 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 ANKRD54Q6NXT1 300 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 MRPL43Q8N983 215 aaKnown RBP20.94■□□□□ 0.94
CLN3-218ENST00000565688 PGBD4Q96DM1 585 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 TMEM169Q96HH4 297 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 LXNQ9BS40 222 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 ZSWIM4Q9H7M6 989 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 IFT122Q9HBG6 1241 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 FAM105AQ9NUU6 356 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 MUC6Q6W4X9 2439 aa20.94■□□□□ 0.94
CLN3-218ENST00000565688 YWHABP31946 246 aaKnown RBP20.93■□□□□ 0.94
CLN3-218ENST00000565688 NOMO2Q5JPE7 1267 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 SRGAP1Q7Z6B7 1085 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 POTEDQ86YR6 584 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 TCP11Q8WWU5 503 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 PRPF31Q8WWY3 499 aaKnown RBP20.93■□□□□ 0.94
CLN3-218ENST00000565688 EDAQ92838 391 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 CASP10Q92851 521 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 AGPAT5Q9NUQ2 364 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 PPP4R2Q9NY27 417 aa20.93■□□□□ 0.94
CLN3-218ENST00000565688 WRAP73Q9P2S5 460 aaPredicted RBP20.93■□□□□ 0.94
CLN3-218ENST00000565688 C2orf71A6NGG8 1288 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 ASAP2O43150 1006 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 ZC3H11AO75152 810 aaKnown RBP eCLIP20.92■□□□□ 0.94
CLN3-218ENST00000565688 LAMTOR4Q0VGL1 99 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 NCAPH2Q6IBW4 605 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 LLGL2Q6P1M3 1020 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 ZNF579Q8NAF0 562 aaKnown RBP20.92■□□□□ 0.94
CLN3-218ENST00000565688 LPPQ93052 612 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 MFSD14AQ96MC6 490 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 S1PR5Q9H228 398 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 KCNH6Q9H252 994 aa20.92■□□□□ 0.94
CLN3-218ENST00000565688 SRGAP2CP0DJJ0 459 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 FDPSP14324 419 aaKnown RBP20.91■□□□□ 0.94
CLN3-218ENST00000565688 HOXD11P31277 338 aaPredicted RBP20.91■□□□□ 0.94
CLN3-218ENST00000565688 RNASELQ05823 741 aaKnown RBP20.91■□□□□ 0.94
CLN3-218ENST00000565688 SPIRE1Q08AE8 756 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 NR5A1Q13285 461 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 EMC2Q15006 297 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 TPRNQ4KMQ1 711 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 XKR9Q5GH70 373 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 EARS2Q5JPH6 523 aaKnown RBP20.91■□□□□ 0.94
CLN3-218ENST00000565688 ERICH6BQ5W0A0 696 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 SYCE2Q6PIF2 218 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 HFE2Q6ZVN8 426 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 TNFRSF25Q93038 417 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 GTF3C6Q969F1 213 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 TMEM143Q96AN5 459 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 DYDC2Q96IM9 177 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 RPGRIP1Q96KN7 1286 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 TBC1D13Q9NVG8 400 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 RGL1Q9NZL6 768 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 PCDHB2Q9Y5E7 798 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 PIEZO1Q92508 2521 aa20.91■□□□□ 0.94
CLN3-218ENST00000565688 NT5C1B-RDH14C9J2C7 533 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 OFD1O75665 1012 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 GIT2Q14161 759 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 PCBP1Q15365 356 aaKnown RBP eCLIP20.9■□□□□ 0.94
CLN3-218ENST00000565688 ME3Q16798 604 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 LONRF3Q496Y0 759 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 DDX53Q86TM3 631 aaKnown RBP20.9■□□□□ 0.94
CLN3-218ENST00000565688 VPS52Q8N1B4 723 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 NECAB1Q8N987 351 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 URGCPQ8TCY9 931 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 IGSF21Q96ID5 467 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 STK39Q9UEW8 545 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 PCDHA12Q9UN75 941 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 INPP5FQ9Y2H2 1132 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 HCFC2Q9Y5Z7 792 aa20.9■□□□□ 0.94
CLN3-218ENST00000565688 CNTNAP2Q9UHC6 1331 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 DTNBO60941 627 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 CXCL14O95715 111 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 CYP4A11Q02928 519 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 TRIM29Q14134 588 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 CTTNQ14247 550 aaKnown RBP20.89■□□□□ 0.93
CLN3-218ENST00000565688 MXD4Q14582 209 aaPredicted RBP20.89■□□□□ 0.93
CLN3-218ENST00000565688 MRPL10Q7Z7H8 261 aaKnown RBP20.89■□□□□ 0.93
CLN3-218ENST00000565688 FERMT3Q86UX7 667 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 TPH2Q8IWU9 490 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 TMEM87AQ8NBN3 555 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 RNF149Q8NC42 400 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 MTRQ99707 1265 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 ZBP1Q9H171 429 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 NRDE2Q9H7Z3 1164 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 KANSL3Q9P2N6 904 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 IRAK3Q9Y616 596 aa20.89■□□□□ 0.93
CLN3-218ENST00000565688 FAM205CA6NFA0 338 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 MEIS3P2A8K0S8 358 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 CLASP2O75122 1294 aaKnown RBP20.88■□□□□ 0.93
CLN3-218ENST00000565688 SLITRK3O94933 977 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 LYPLA2O95372 231 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 GALTP07902 379 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 HOXA11P31270 313 aaPredicted RBP20.88■□□□□ 0.93
CLN3-218ENST00000565688 CA8P35219 290 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 ZXDAP98168 799 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 ITIH3Q06033 890 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 CALCRLQ16602 461 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 CES5AQ6NT32 575 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 TRIM67Q6ZTA4 783 aa20.88■□□□□ 0.93
CLN3-218ENST00000565688 BMP8AQ7Z5Y6 402 aa20.88■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms