RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 CEP89Q96ST8 783 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 PLIN2Q99541 437 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 MMTAG2Q9BU76 263 aaKnown RBP19.16■□□□□ 0.66
CLN3-217ENST00000565354 IFIH1Q9BYX4 1025 aaKnown RBP19.16■□□□□ 0.66
CLN3-217ENST00000565354 OSBPL7Q9BZF2 842 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 SUCLA2Q9P2R7 463 aaPredicted RBP19.16■□□□□ 0.66
CLN3-217ENST00000565354 EVPLQ92817 2033 aa19.16■□□□□ 0.66
CLN3-217ENST00000565354 CHRNA1P02708 482 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 NLRP11P59045 1033 aaKnown RBP19.15■□□□□ 0.66
CLN3-217ENST00000565354 CDC42EP1Q00587 391 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 KIZQ2M2Z5 673 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 CTC1Q2NKJ3 1217 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 SPECC1Q5M775 1068 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 ZNF710Q8N1W2 664 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 LINC01465Q8N7H1 131 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 NLRP7Q8WX94 980 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 MFSD14AQ96MC6 490 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 BHMT2Q9H2M3 363 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 DHX33Q9H6R0 707 aaKnown RBP19.15■□□□□ 0.66
CLN3-217ENST00000565354 CCDC39Q9UFE4 941 aa19.15■□□□□ 0.66
CLN3-217ENST00000565354 MORC2Q9Y6X9 1032 aaPredicted RBP19.15■□□□□ 0.66
CLN3-217ENST00000565354 IGKV6-21A0A0C4DH24 114 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 E9PMD0 336 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 EYA4O95677 639 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 SSBP05455 408 aaKnown RBP eCLIP19.14■□□□□ 0.65
CLN3-217ENST00000565354 CTNNB1P35222 781 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 ME1P48163 572 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 RHPN2Q8IUC4 686 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 KCTD17Q8N5Z5 321 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 PSPC1Q8WXF1 523 aaKnown RBP19.14■□□□□ 0.65
CLN3-217ENST00000565354 APBB2Q92870 758 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 TMEM143Q96AN5 459 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 POP1Q99575 1024 aaKnown RBP19.14■□□□□ 0.65
CLN3-217ENST00000565354 OSMRQ99650 979 aa19.14■□□□□ 0.65
CLN3-217ENST00000565354 USP34Q70CQ2 3546 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 ZDBF2Q9HCK1 2354 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 C5orf67F2Z3F1 127 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 RB1P06400 928 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 CRYBB1P53674 252 aaPredicted RBP19.13■□□□□ 0.65
CLN3-217ENST00000565354 DRP2Q13474 957 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 KARSQ15046 597 aaKnown RBP19.13■□□□□ 0.65
CLN3-217ENST00000565354 HERC4Q5GLZ8 1057 aaPredicted RBP19.13■□□□□ 0.65
CLN3-217ENST00000565354 FBXO47Q5MNV8 452 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 ODR4Q5SWX8 454 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 HYIQ5T013 277 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 PADI6Q6TGC4 694 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 TSHZ1Q6ZSZ6 1077 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 MAEAQ7L5Y9 396 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 FIBCD1Q8N539 461 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 MCPH1Q8NEM0 835 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 EPSTI1Q96J88 318 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 ZNF668Q96K58 619 aaPredicted RBP19.13■□□□□ 0.65
CLN3-217ENST00000565354 SPATA32Q96LK8 384 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 NLRP4Q96MN2 994 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 PNMA5Q96PV4 448 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 CCSER1Q9C0I3 900 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 LMAN2LQ9H0V9 348 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 LOXHD1Q8IVV2 1947 aa19.13■□□□□ 0.65
CLN3-217ENST00000565354 MBTPS2O43462 519 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 CUTAO60888 179 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 RPS6KA5O75582 802 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 BMPR1AP36894 532 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 GPC3P51654 580 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 DLX2Q07687 328 aaPredicted RBP19.12■□□□□ 0.65
CLN3-217ENST00000565354 HYAL1Q12794 435 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 PAK2Q13177 524 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 CLUL1Q15846 466 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 C11orf84Q9BUA3 381 aaPredicted RBP19.12■□□□□ 0.65
CLN3-217ENST00000565354 MUTYHQ9UIF7 546 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 CIZ1Q9ULV3 898 aaPredicted RBP19.12■□□□□ 0.65
CLN3-217ENST00000565354 RBM19Q9Y4C8 960 aaKnown RBP19.12■□□□□ 0.65
CLN3-217ENST00000565354 COL4A3BPQ9Y5P4 624 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 SQORQ9Y6N5 450 aa19.12■□□□□ 0.65
CLN3-217ENST00000565354 GRM6O15303 877 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 ASAP2O43150 1006 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 GPR32O75388 356 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 PLCG1P19174 1290 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 NFX1Q12986 1120 aaKnown RBP19.11■□□□□ 0.65
CLN3-217ENST00000565354 TFDP1Q14186 410 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 LPIN1Q14693 890 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 TMEM119Q4V9L6 283 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 FAM102BQ5T8I3 360 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 ZNF410Q86VK4 478 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 RNF135Q8IUD6 432 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 GCOM2Q9BZD3 368 aaPredicted RBP19.11■□□□□ 0.65
CLN3-217ENST00000565354 SCAND2PQ9GZW5 306 aaPredicted RBP19.11■□□□□ 0.65
CLN3-217ENST00000565354 POLR3FQ9H1D9 316 aaPredicted RBP19.11■□□□□ 0.65
CLN3-217ENST00000565354 CDHR5Q9HBB8 845 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 XPNPEP1Q9NQW7 623 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 RWDD3Q9Y3V2 267 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 TTC3P53804 2025 aa19.11■□□□□ 0.65
CLN3-217ENST00000565354 A0A087WZ62 844 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 GPR182O15218 404 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 LINC00271P0C7V0 271 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 PLA2G4BP0C869 781 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 SRGAP2CP0DJJ0 459 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 CYP11B2P19099 503 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 CD52P31358 61 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 DDIT3P35638 169 aa19.1■□□□□ 0.65
CLN3-217ENST00000565354 SMAD4Q13485 552 aaKnown RBP19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms