RNA–Protein interactions for RNA: ENST00000563239.1

UBR1-204, Transcript of ubiquitin protein ligase E3 component n-recognin 1, humanhuman

TSL 3

Gene UBR1, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR1-204ENST00000563239 NT5C3AQ9H0P0 336 aa9.48□□□□□ -0.89
UBR1-204ENST00000563239 RNF19AQ9NV58 838 aa9.48□□□□□ -0.89
UBR1-204ENST00000563239 DAXXQ9UER7 740 aaPredicted RBP9.48□□□□□ -0.89
UBR1-204ENST00000563239 INSL6Q9Y581 213 aa9.48□□□□□ -0.89
UBR1-204ENST00000563239 NPHP3-ACAD11A0A0J9YXS1 232 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 DENND3A2RUS2 1198 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 TTLL13PA6NNM8 815 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 TSPAN1O60635 241 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 PPP6R2O75170 966 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 EDN1P05305 212 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 ATF7P17544 494 aaPredicted RBP9.47□□□□□ -0.89
UBR1-204ENST00000563239 SFPQP23246 707 aaKnown RBP eCLIP9.47□□□□□ -0.89
UBR1-204ENST00000563239 GUCY2CP25092 1073 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 PHKA2P46019 1235 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 STK38Q15208 465 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 UBXN11Q5T124 520 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 PPP2R2DQ66LE6 453 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 CATSPER4Q7RTX7 472 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 ZNF598Q86UK7 904 aaKnown RBP9.47□□□□□ -0.89
UBR1-204ENST00000563239 ECHDC2Q86YB7 292 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 NPAS4Q8IUM7 802 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 RAD54LQ92698 747 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 CDX2Q99626 313 aaPredicted RBP9.47□□□□□ -0.89
UBR1-204ENST00000563239 TRAIPQ9BWF2 469 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 INO80BQ9C086 356 aaPredicted RBP9.47□□□□□ -0.89
UBR1-204ENST00000563239 SLC28A3Q9HAS3 691 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 CHST12Q9NRB3 414 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 C1orf112Q9NSG2 853 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 AGPAT5Q9NUQ2 364 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 RCOR1Q9UKL0 485 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 ADGRA3Q8IWK6 1321 aa9.47□□□□□ -0.89
UBR1-204ENST00000563239 A0A0U1RQF3 1178 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 SFI1A8K8P3 1242 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 RFXAPO00287 272 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 B4GALT5O43286 388 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 HIP1RO75146 1068 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 NAMPTP43490 491 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 ERVK-21P61565 698 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 CACNB1Q02641 598 aaPredicted RBP9.46□□□□□ -0.9
UBR1-204ENST00000563239 TFDP1Q14186 410 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 ADGRE1Q14246 886 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 MCM6Q14566 821 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 ATL3Q6DD88 541 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 SHC4Q6S5L8 630 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 MYLIPQ8WY64 445 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 KIFAP3Q92845 792 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 CALML4Q96GE6 196 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 CDK5RAP3Q96JB5 506 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 YME1L1Q96TA2 773 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 C17orf80Q9BSJ5 609 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 KIFC3Q9BVG8 833 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 CCDC113Q9H0I3 377 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 FZD8Q9H461 694 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 PRDM12Q9H4Q4 367 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 ELAC1Q9H777 363 aaKnown RBP9.46□□□□□ -0.9
UBR1-204ENST00000563239 CERS4Q9HA82 394 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 TMEM161AQ9NX61 479 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 PCDHA7Q9UN72 937 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 PIN4Q9Y237 131 aaKnown RBP9.46□□□□□ -0.9
UBR1-204ENST00000563239 USP20Q9Y2K6 914 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 PRUNE2Q8WUY3 3088 aa9.46□□□□□ -0.9
UBR1-204ENST00000563239 LRRIQ4A6NIV6 560 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 MEIS3P2A8K0S8 358 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 INO80B-WBP1J3KQ70 363 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 LPXNO60711 386 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 CUTAO60888 179 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 ZNF623O75123 536 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 SSBP05455 408 aaKnown RBP eCLIP9.45□□□□□ -0.9
UBR1-204ENST00000563239 STAG3L1P0CL83 205 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 FGFR1P11362 822 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 ZSCAN20P17040 1043 aaPredicted RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 ARF4P18085 180 aaPredicted RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 NPTX2P47972 431 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 RAD51AP2Q09MP3 1159 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 GIT2Q14161 759 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 PCBP1Q15365 356 aaKnown RBP eCLIP9.45□□□□□ -0.9
UBR1-204ENST00000563239 FAM187BQ17R55 369 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 CLLU1OSQ5K130 101 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 TAS1R3Q7RTX0 852 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 MRPL10Q7Z7H8 261 aaKnown RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 GPBP1Q86WP2 473 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 LEO1Q8WVC0 666 aaPredicted RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 CLP1Q92989 425 aaKnown RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 CPB2Q96IY4 423 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 CASD1Q96PB1 797 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 NTPCRQ9BSD7 190 aaKnown RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 COL25A1Q9BXS0 654 aaPredicted RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 EIF2AQ9BY44 585 aaKnown RBP9.45□□□□□ -0.9
UBR1-204ENST00000563239 PANK2Q9BZ23 570 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 HCSTQ9UBK5 93 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 PCDHB7Q9Y5E2 793 aa9.45□□□□□ -0.9
UBR1-204ENST00000563239 A0A1B0GUA9 196 aa9.44□□□□□ -0.9
UBR1-204ENST00000563239 EOMESO95936 686 aa9.44□□□□□ -0.9
UBR1-204ENST00000563239 IBSPP21815 317 aaPredicted RBP9.44□□□□□ -0.9
UBR1-204ENST00000563239 VASPP50552 380 aaPredicted RBP9.44□□□□□ -0.9
UBR1-204ENST00000563239 ZNF131P52739 623 aa9.44□□□□□ -0.9
UBR1-204ENST00000563239 PEX3P56589 373 aa9.44□□□□□ -0.9
UBR1-204ENST00000563239 DHX8Q14562 1220 aaKnown RBP9.44□□□□□ -0.9
UBR1-204ENST00000563239 E2F4Q16254 413 aa9.44□□□□□ -0.9
UBR1-204ENST00000563239 EPC2Q52LR7 807 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms