RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 SLC39A11Q8N1S5 342 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 SUSD6Q92537 303 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 RPGRIP1Q96KN7 1286 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 NLRP4Q96MN2 994 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 PHF7Q9BWX1 381 aaPredicted RBP13.06□□□□□ -0.32
USP3-220ENST00000561381 S1PR5Q9H228 398 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 DACT1Q9NYF0 836 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 SPG21Q9NZD8 308 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 CDH22Q9UJ99 828 aa13.06□□□□□ -0.32
USP3-220ENST00000561381 CCDC194A0A1B0GVG4 234 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 MAFO75444 373 aaPredicted RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 CTDNEP1O95476 244 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 PPM1AP35813 382 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 PHKA2P46019 1235 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 DNM2P50570 870 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 BCAR1P56945 870 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 KRT17Q04695 432 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 PPP2R5CQ13362 524 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 CBX2Q14781 532 aaPredicted RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 TWF2Q6IBS0 349 aaKnown RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 ANKRD54Q6NXT1 300 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 TMEM184AQ6ZMB5 413 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 PIK3AP1Q6ZUJ8 805 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 TMC7Q7Z402 723 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 NEK8Q86SG6 692 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 TMEM173Q86WV6 379 aaPredicted RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 FAM177A1Q8N128 213 aaPredicted RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 EDAQ92838 391 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 HAS1Q92839 578 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 SLKQ9H2G2 1235 aaPredicted RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 KCNMB3Q9NPA1 279 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 NGRNQ9NPE2 291 aaKnown RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 CYP26B1Q9NR63 512 aa13.05□□□□□ -0.32
USP3-220ENST00000561381 PIN4Q9Y237 131 aaKnown RBP13.05□□□□□ -0.32
USP3-220ENST00000561381 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 C2orf71A6NGG8 1288 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 CCNT1O60563 726 aaKnown RBP13.04□□□□□ -0.32
USP3-220ENST00000561381 PFKFB2O60825 505 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 SFPQP23246 707 aaKnown RBP eCLIP13.04□□□□□ -0.32
USP3-220ENST00000561381 SP100P23497 879 aaPredicted RBP13.04□□□□□ -0.32
USP3-220ENST00000561381 QARSP47897 775 aaKnown RBP13.04□□□□□ -0.32
USP3-220ENST00000561381 MMRN1Q13201 1228 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 ZNF410Q86VK4 478 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 TMEM143Q96AN5 459 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 FBXL18Q96ME1 805 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 FAM20AQ96MK3 541 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 IFT122Q9HBG6 1241 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 CHST12Q9NRB3 414 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 ZNF318Q5VUA4 2279 aa13.04□□□□□ -0.32
USP3-220ENST00000561381 ZBTB39O15060 712 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 B4GALT3O60512 393 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 ZC3H11AO75152 810 aaKnown RBP eCLIP13.03□□□□□ -0.32
USP3-220ENST00000561381 CDKL5O76039 1030 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 ALDH7A1P49419 539 aaKnown RBP13.03□□□□□ -0.32
USP3-220ENST00000561381 ZXDAP98168 799 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 CDC42EP1Q00587 391 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 SMC1AQ14683 1233 aaKnown RBP13.03□□□□□ -0.32
USP3-220ENST00000561381 PPP4R3AQ6IN85 833 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 CATSPER4Q7RTX7 472 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 MRPL43Q8N983 215 aaKnown RBP13.03□□□□□ -0.32
USP3-220ENST00000561381 BCL7CQ8WUZ0 217 aaPredicted RBP13.03□□□□□ -0.32
USP3-220ENST00000561381 AUTS2Q8WXX7 1259 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 CEP170P1Q96L14 293 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 TRAIPQ9BWF2 469 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 MRPL9Q9BYD2 267 aaKnown RBP13.03□□□□□ -0.32
USP3-220ENST00000561381 NRDE2Q9H7Z3 1164 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 MINDY3Q9H8M7 445 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 FAM105AQ9NUU6 356 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 RGL1Q9NZL6 768 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 INPP5FQ9Y2H2 1132 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 COL4A3BPQ9Y5P4 624 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 HCFC2Q9Y5Z7 792 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 STK36Q9NRP7 1315 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 TRIOO75962 3097 aa13.03□□□□□ -0.32
USP3-220ENST00000561381 FSD2A1L4K1 749 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 TMEM221A6NGB7 291 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 M0R296 226 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 CLASP2O75122 1294 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 OFD1O75665 1012 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 LARGE1O95461 756 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 CXCL14O95715 111 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 P4HBP07237 508 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 SRGAP2CP0DJJ0 459 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 SRGAP2BP0DMP2 458 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 GCFC2P16383 781 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 CA8P35219 290 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 AFF1P51825 1210 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 AK2P54819 239 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 NR5A1Q13285 461 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 CTTNQ14247 550 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 NOMO2Q5JPE7 1267 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 NCAPH2Q6IBW4 605 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 TRIM67Q6ZTA4 783 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 VPS52Q8N1B4 723 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 NECAB1Q8N987 351 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 PRPF31Q8WWY3 499 aaKnown RBP13.02□□□□□ -0.33
USP3-220ENST00000561381 SLC7A3Q8WY07 619 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 DYDC2Q96IM9 177 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 LXNQ9BS40 222 aa13.02□□□□□ -0.33
USP3-220ENST00000561381 INO80BQ9C086 356 aaPredicted RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms