RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 NCAPH2Q6IBW4 605 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 OTUD6AQ7L8S5 288 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 TMC7Q7Z402 723 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 RNF135Q8IUD6 432 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 PSPC1Q8WXF1 523 aaKnown RBP18.14■□□□□ 0.49
SNX1-213ENST00000561026 TMEM143Q96AN5 459 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 FAM122AQ96E09 287 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 ZSWIM4Q9H7M6 989 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 FAM105AQ9NUU6 356 aa18.14■□□□□ 0.49
SNX1-213ENST00000561026 RAB27AP51159 221 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 NEK4P51957 841 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 BCAR1P56945 870 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 HERC4Q5GLZ8 1057 aaPredicted RBP18.13■□□□□ 0.49
SNX1-213ENST00000561026 MRPL43Q8N983 215 aaKnown RBP18.13■□□□□ 0.49
SNX1-213ENST00000561026 NSUN7Q8NE18 718 aaKnown RBP18.13■□□□□ 0.49
SNX1-213ENST00000561026 LPPQ93052 612 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 DYDC2Q96IM9 177 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 MUTYHQ9UIF7 546 aa18.13■□□□□ 0.49
SNX1-213ENST00000561026 BTBD18B2RXH4 712 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 ZBTB39O15060 712 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 GAS2O43903 313 aaKnown RBP18.12■□□□□ 0.49
SNX1-213ENST00000561026 EIF5BO60841 1220 aaKnown RBP18.12■□□□□ 0.49
SNX1-213ENST00000561026 SLITRK3O94933 977 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 SRGAP2CP0DJJ0 459 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 SRGAP2BP0DMP2 458 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 CYP4A11Q02928 519 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 LAMTOR4Q0VGL1 99 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 CTTNQ14247 550 aaKnown RBP18.12■□□□□ 0.49
SNX1-213ENST00000561026 LONRF3Q496Y0 759 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 GLB1LQ6UWU2 654 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 SRGAP1Q7Z6B7 1085 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 TCP11Q8WWU5 503 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 SUSD6Q92537 303 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 PHF7Q9BWX1 381 aaPredicted RBP18.12■□□□□ 0.49
SNX1-213ENST00000561026 AGPAT5Q9NUQ2 364 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 PCDHA12Q9UN75 941 aa18.12■□□□□ 0.49
SNX1-213ENST00000561026 MEIS3P2A8K0S8 358 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 LOC730098B7Z3J9 87 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 NT5C1B-RDH14C9J2C7 533 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 ASAP2O43150 1006 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 JAK2O60674 1132 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 OFD1O75665 1012 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 TECP42680 631 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 SMC1AQ14683 1233 aaKnown RBP18.11■□□□□ 0.49
SNX1-213ENST00000561026 EMC2Q15006 297 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 XKR9Q5GH70 373 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 NOMO2Q5JPE7 1267 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 ANKRD54Q6NXT1 300 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 TPH2Q8IWU9 490 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 HSD17B14Q9BPX1 270 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 S1PR5Q9H228 398 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 MINDY3Q9H8M7 445 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 BMP2KQ9NSY1 1161 aaPredicted RBP18.11■□□□□ 0.49
SNX1-213ENST00000561026 TBC1D13Q9NVG8 400 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 PCDHB2Q9Y5E7 798 aa18.11■□□□□ 0.49
SNX1-213ENST00000561026 CARNS1A5YM72 827 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 C2orf71A6NGG8 1288 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 ZC3H11AO75152 810 aaKnown RBP eCLIP18.1■□□□□ 0.49
SNX1-213ENST00000561026 HOXA11P31270 313 aaPredicted RBP18.1■□□□□ 0.49
SNX1-213ENST00000561026 CBX2Q14781 532 aaPredicted RBP18.1■□□□□ 0.49
SNX1-213ENST00000561026 CALCRLQ16602 461 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 SYCE2Q6PIF2 218 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 FERMT3Q86UX7 667 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 DIS3L2Q8IYB7 885 aaKnown RBP18.1■□□□□ 0.49
SNX1-213ENST00000561026 PGBD4Q96DM1 585 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 TMEM169Q96HH4 297 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 EIF2AK1Q9BQI3 630 aaKnown RBP18.1■□□□□ 0.49
SNX1-213ENST00000561026 INPP5FQ9Y2H2 1132 aa18.1■□□□□ 0.49
SNX1-213ENST00000561026 LYPLA2O95372 231 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 HOXB8P17481 243 aaPredicted RBP18.09■□□□□ 0.49
SNX1-213ENST00000561026 TRIM29Q14134 588 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 BMS1Q14692 1282 aaKnown RBP18.09■□□□□ 0.49
SNX1-213ENST00000561026 LLGL2Q6P1M3 1020 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 MRPL10Q7Z7H8 261 aaKnown RBP18.09■□□□□ 0.49
SNX1-213ENST00000561026 TMEM173Q86WV6 379 aaPredicted RBP18.09■□□□□ 0.49
SNX1-213ENST00000561026 RNF149Q8NC42 400 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 MTRQ99707 1265 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 NRDE2Q9H7Z3 1164 aa18.09■□□□□ 0.49
SNX1-213ENST00000561026 TTC12Q9H892 705 aaPredicted RBP18.09■□□□□ 0.49
SNX1-213ENST00000561026 WNT7AO00755 349 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 NEMFO60524 1076 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 SEC24BO95487 1268 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 CXCL14O95715 111 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 GALTP07902 379 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 RNASELQ05823 741 aaKnown RBP18.08■□□□□ 0.49
SNX1-213ENST00000561026 MXD4Q14582 209 aaPredicted RBP18.08■□□□□ 0.49
SNX1-213ENST00000561026 UBXN11Q5T124 520 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 AGMOQ6ZNB7 445 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 DDX53Q86TM3 631 aaKnown RBP18.08■□□□□ 0.49
SNX1-213ENST00000561026 VPS52Q8N1B4 723 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 EDAQ92838 391 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 CASP10Q92851 521 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 IGSF21Q96ID5 467 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 RPGRIP1Q96KN7 1286 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 MTMR9Q96QG7 549 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 XPNPEP1Q9NQW7 623 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 HCFC2Q9Y5Z7 792 aa18.08■□□□□ 0.49
SNX1-213ENST00000561026 MUC6Q6W4X9 2439 aa18.07■□□□□ 0.48
SNX1-213ENST00000561026 CLASP2O75122 1294 aaKnown RBP18.07■□□□□ 0.48
SNX1-213ENST00000561026 TXKP42681 527 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms