RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TNNC1P63316 161 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 APBA1Q02410 837 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 KCNH2Q12809 1159 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 UVSSAQ2YD98 709 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 EPC2Q52LR7 807 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CELF3Q5SZQ8 465 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NFRKBQ6P4R8 1299 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 CBWD2Q8IUF1 395 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ENGASEQ8NFI3 743 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 NEK9Q8TD19 979 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 DHTKD1Q96HY7 919 aaPredicted RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 ANKRD36BP1Q96IX9 119 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 MRPL4Q9BYD3 311 aaKnown RBP5.92□□□□□ -1.46
VPS13C-209ENST00000560637 BLOC1S4Q9NUP1 217 aa5.92□□□□□ -1.46
VPS13C-209ENST00000560637 MYH3P11055 1940 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 EMSYQ7Z589 1322 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 AFPP02771 609 aaKnown RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SLC10A3P09131 477 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PDGFRBP09619 1106 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 KLK7P49862 253 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 GUCY2FP51841 1108 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 GIT2Q14161 759 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 MTFR1Q15390 333 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 NBPF20Q3BBV1 942 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 WDR72Q3MJ13 1102 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 CCDC122Q5T0U0 273 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 IER5Q5VY09 327 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ADAT2Q7Z6V5 191 aaKnown RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ZSCAN30Q86W11 494 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 CEP120Q8N960 986 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SYT2Q8N9I0 419 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ARRDC4Q8NCT1 418 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 LBHD1Q9BQE6 289 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 MAGEF1Q9HAY2 307 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 VTA1Q9NP79 307 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SPTLC3Q9NUV7 552 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 UBIAD1Q9Y5Z9 338 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TLL2Q9Y6L7 1015 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 DCDC2CA8MYV0 355 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 H0YCG3 227 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TREHO43280 583 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PPFIA4O75335 1185 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 FARP2O94887 1054 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 POMCP01189 267 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PLS3P13797 630 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 DNAJB2P25686 324 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 STAT1P42224 750 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PSEN2P49810 448 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 HSD17B4P51659 736 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PMS1P54277 932 aaKnown RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PLCB3Q01970 1234 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 KCNA10Q16322 511 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 PTGISQ16647 500 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 Q4G0T1 1027 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 GPAT2Q6NUI2 795 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 GJB7Q6PEY0 223 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ANO5Q75V66 913 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SCN4BQ8IWT1 228 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TAB3Q8N5C8 712 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SHCBP1Q8NEM2 672 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ATP8B4Q8TF62 1192 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SLC5A5Q92911 643 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 C12orf42Q96LP6 360 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 NT5C1BQ96P26 610 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 INPP4AQ96PE3 977 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 MTMR9Q96QG7 549 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 KATNAL1Q9BW62 490 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TMEM39AQ9NV64 488 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 HSPBP1Q9NZL4 362 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 CTTNBP2NLQ9P2B4 639 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 CHORDC1Q9UHD1 332 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ZMYND8Q9ULU4 1186 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TIMM13Q9Y5L4 95 aaPredicted RBP5.91□□□□□ -1.46
VPS13C-209ENST00000560637 TRIOBPQ9H2D6 2365 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 SCN9AQ15858 1988 aa5.91□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF862O60290 1169 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TGFB3P10600 412 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PPP1R2P41236 205 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 MAGEA1P43355 309 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 OR1G1P47890 313 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 CACNB2Q08289 660 aaPredicted RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 RBL2Q08999 1139 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 LAMTOR4Q0VGL1 99 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 KIF5AQ12840 1032 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ZNF569Q5MCW4 686 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 TEX35Q5T0J7 233 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ATF7IP2Q5U623 682 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SFMBT2Q5VUG0 894 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 OLFML2BQ68BL8 750 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SCYL2Q6P3W7 929 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 DCUN1D2Q6PH85 259 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 DNAAF5Q86Y56 855 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 CNGA4Q8IV77 575 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 ETNPPLQ8TBG4 499 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 PPM1EQ8WY54 764 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 MS4A4AQ96JQ5 239 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 MMTAG2Q9BU76 263 aaKnown RBP5.9□□□□□ -1.46
VPS13C-209ENST00000560637 FGFBP2Q9BYJ0 223 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 SLITRK6Q9H5Y7 841 aa5.9□□□□□ -1.46
VPS13C-209ENST00000560637 KCNMB3Q9NPA1 279 aa5.9□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms