RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 ELOA2Q8IYF1 753 aaPredicted RBP13.09□□□□□ -0.31
LDLR-212ENST00000560467 EFHBQ8N7U6 833 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 SMRP1Q8NCR6 262 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 RDM1Q8NG50 284 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 P2RX5Q93086 422 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 LENG9Q96B70 501 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 MFSD14AQ96MC6 490 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 PHOX2BQ99453 314 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 KCNH6Q9H252 994 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 TMX1Q9H3N1 280 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 CLSTN2Q9H4D0 955 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 STK17AQ9UEE5 414 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 PADI3Q9ULW8 664 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 BARX2Q9UMQ3 279 aaPredicted RBP13.09□□□□□ -0.31
LDLR-212ENST00000560467 DNM3Q9UQ16 869 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 HPSEQ9Y251 543 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 ZDBF2Q9HCK1 2354 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 C5orf42Q9H799 3197 aa13.09□□□□□ -0.31
LDLR-212ENST00000560467 DOCK5Q9H7D0 1870 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 RRN3P2A6NIE6 340 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 PSMD10O75832 226 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 MYL1P05976 194 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 MUTP22033 750 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 RBM10P98175 930 aaKnown RBP13.08□□□□□ -0.32
LDLR-212ENST00000560467 GRIN1Q05586 938 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 PLCB4Q15147 1175 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 EPHA7Q15375 998 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 CAMK4Q16566 473 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 IER5Q5VY09 327 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 ZNF746Q6NUN9 644 aaPredicted RBP13.08□□□□□ -0.32
LDLR-212ENST00000560467 KRBA2Q6ZNG9 492 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 SV2BQ7L1I2 683 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 SMAP1Q8IYB5 467 aaPredicted RBP13.08□□□□□ -0.32
LDLR-212ENST00000560467 PRSS33Q8NF86 280 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 ENGASEQ8NFI3 743 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 POF1BQ8WVV4 589 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 EDAQ92838 391 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 PPP2R3CQ969Q6 453 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 CCDC43Q96MW1 224 aaKnown RBP13.08□□□□□ -0.32
LDLR-212ENST00000560467 FTHL17Q9BXU8 183 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 GOLPH3LQ9H4A5 285 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 DISC1Q9NRI5 854 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 SLC9A2Q9UBY0 812 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 USP15Q9Y4E8 981 aaPredicted RBP13.08□□□□□ -0.32
LDLR-212ENST00000560467 TTC3P53804 2025 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 NFASCO94856 1347 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 IGSF9BQ9UPX0 1349 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 RALGAPA2Q2PPJ7 1873 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 NLRC5Q86WI3 1866 aa13.08□□□□□ -0.32
LDLR-212ENST00000560467 ATG2AQ2TAZ0 1938 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 TRIOO75962 3097 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 TMEM221A6NGB7 291 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 POTEMA6NI47 508 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 M0QZ92 97 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 M0R296 226 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 DDX39AO00148 427 aaKnown RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 EDIL3O43854 480 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 PSAPP07602 524 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 RPA1P27694 616 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 ACTR2P61160 394 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 COASYQ13057 564 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 SNW1Q13573 536 aaKnown RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 KARSQ15046 597 aaKnown RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 NAALADL2Q58DX5 795 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 IER5LQ5T953 404 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 MIS18BP1Q6P0N0 1132 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 VN1R2Q8NFZ6 395 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 POLR3CQ9BUI4 534 aaPredicted RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 CELF4Q9BZC1 486 aaKnown RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 GTPBP4Q9BZE4 634 aaKnown RBP13.07□□□□□ -0.32
LDLR-212ENST00000560467 AZI2Q9H6S1 392 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 TUFT1Q9NNX1 390 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 HCSTQ9UBK5 93 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 PCDHA2Q9Y5H9 948 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 PCDHA10Q9Y5I2 948 aa13.07□□□□□ -0.32
LDLR-212ENST00000560467 CACNA1HO95180 2353 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 LOC730098B7Z3J9 87 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 PER2O15055 1255 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 MGEA5O60502 916 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 RPLP2P05387 115 aaKnown RBP13.06□□□□□ -0.32
LDLR-212ENST00000560467 P4HBP07237 508 aaKnown RBP13.06□□□□□ -0.32
LDLR-212ENST00000560467 STAG3L1P0CL83 205 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 CCDC192P0DO97 292 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 CDC25AP30304 524 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 ITGB3BPQ13352 177 aaPredicted RBP13.06□□□□□ -0.32
LDLR-212ENST00000560467 ZSCAN23Q3MJ62 389 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 LONRF3Q496Y0 759 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 TRIM67Q6ZTA4 783 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 TPH2Q8IWU9 490 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 GJA10Q969M2 543 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 NACC1Q96RE7 527 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 EIF2AK1Q9BQI3 630 aaKnown RBP13.06□□□□□ -0.32
LDLR-212ENST00000560467 ZSWIM4Q9H7M6 989 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 RMND1Q9NWS8 449 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 SERTAD1Q9UHV2 236 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 VAV3Q9UKW4 847 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 LRFN2Q9ULH4 789 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 KIAA1024Q9UPX6 916 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 GINS2Q9Y248 185 aa13.06□□□□□ -0.32
LDLR-212ENST00000560467 SQORQ9Y6N5 450 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms