RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 NPLOC4Q8TAT6 608 aa13.86□□□□□ -0.19
USP3-213ENST00000559711 ABHD16BQ9H3Z7 469 aa13.86□□□□□ -0.19
USP3-213ENST00000559711 PCIF1Q9H4Z3 704 aa13.86□□□□□ -0.19
USP3-213ENST00000559711 FBXL5Q9UKA1 691 aa13.86□□□□□ -0.19
USP3-213ENST00000559711 PAXBP1Q9Y5B6 917 aa13.86□□□□□ -0.19
USP3-213ENST00000559711 LRRC53A6NM62 1247 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 FAM155AB1AL88 458 aaPredicted RBP13.85□□□□□ -0.19
USP3-213ENST00000559711 HBP1O60381 514 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 TLR2O60603 784 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 SLC9A1P19634 815 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 FMO5P49326 533 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 ETF1P62495 437 aaKnown RBP13.85□□□□□ -0.19
USP3-213ENST00000559711 IRF5Q13568 498 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 KLHDC7AQ5VTJ3 777 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 IER5Q5VY09 327 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 SLC39A4Q6P5W5 647 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 CACNA2D4Q7Z3S7 1137 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 PPTC7Q8NI37 304 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 CCDC102AQ96A19 550 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 FBXL18Q96ME1 805 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 NHEJ1Q9H9Q4 299 aaPredicted RBP13.85□□□□□ -0.19
USP3-213ENST00000559711 PIGRP01833 764 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 HOXC6P09630 235 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 KRT13P13646 458 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 GARTP22102 1010 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 MARK3P27448 753 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 ADCYAP1R1P41586 468 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 POLR2FP61218 127 aaKnown RBP13.85□□□□□ -0.19
USP3-213ENST00000559711 MAP2K5Q13163 448 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 ACVR2BQ13705 512 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 DUSP28Q4G0W2 176 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 IQSEC1Q6DN90 963 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 RDH13Q8NBN7 331 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 USP6NLQ92738 828 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 JPH2Q9BR39 696 aaPredicted RBP13.85□□□□□ -0.19
USP3-213ENST00000559711 TMEM134Q9H6X4 195 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 ERAP1Q9NZ08 941 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 MYO6Q9UM54 1294 aa13.85□□□□□ -0.19
USP3-213ENST00000559711 ZNFX1Q9P2E3 1918 aaKnown RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 EIF3CLB5ME19 914 aaKnown RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 PMM2O15305 246 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 PPFIA4O75335 1185 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 HOXD8P13378 290 aaPredicted RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 UCHL3P15374 230 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 CYLC1P35663 651 aaPredicted RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 VAMP7P51809 220 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 APBA1Q02410 837 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 ENPEPQ07075 957 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 MKRN4PQ13434 485 aaPredicted RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 GJC2Q5T442 439 aaPredicted RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 ACRBPQ8NEB7 543 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 ZSWIM2Q8NEG5 633 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 KIF18AQ8NI77 898 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 DEPTORQ8TB45 409 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 TCP11Q8WWU5 503 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 HHIPL1Q96JK4 782 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 EIF3CQ99613 913 aaKnown RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 SIX2Q9NPC8 291 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 NLRC4Q9NPP4 1024 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 AIPL1Q9NZN9 384 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 ARHGAP20Q9P2F6 1191 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 REXO2Q9Y3B8 237 aaKnown RBP13.84□□□□□ -0.19
USP3-213ENST00000559711 STYXL1Q9Y6J8 313 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 TRPM7Q96QT4 1865 aa13.84□□□□□ -0.19
USP3-213ENST00000559711 WDR81Q562E7 1941 aa13.83□□□□□ -0.19
USP3-213ENST00000559711 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.83□□□□□ -0.2
USP3-213ENST00000559711 K7ERI5 159 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 P4HA2O15460 535 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 ADCY3O60266 1144 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 LGALS2P05162 132 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 ACTN1P12814 892 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 SMPD1P17405 629 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 TM4SF4P48230 202 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 KRT83P78385 493 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 SREBF2Q12772 1141 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 STRN3Q13033 797 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 MAPK8IP2Q13387 824 aaPredicted RBP13.83□□□□□ -0.2
USP3-213ENST00000559711 CAPSQ13938 189 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 SNRNP35Q16560 246 aaKnown RBP13.83□□□□□ -0.2
USP3-213ENST00000559711 CBWD6Q4V339 395 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 CBWD3Q5JTY5 395 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 CBWD5Q5RIA9 395 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 C1orf220Q5T0J3 134 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 HGSNATQ68CP4 663 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 ZNF662Q6ZS27 426 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 AFG1LQ8WV93 481 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 PRPF31Q8WWY3 499 aaKnown RBP13.83□□□□□ -0.2
USP3-213ENST00000559711 ZFYVE28Q9HCC9 887 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 GCNT4Q9P109 453 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 MYH11P35749 1972 aa13.83□□□□□ -0.2
USP3-213ENST00000559711 SSU72P8A0A1W2PR75 194 aa13.82□□□□□ -0.2
USP3-213ENST00000559711 LRRIQ4A6NIV6 560 aa13.82□□□□□ -0.2
USP3-213ENST00000559711 HNRNPDLO14979 420 aaKnown RBP13.82□□□□□ -0.2
USP3-213ENST00000559711 KIAA0391O15091 583 aaKnown RBP13.82□□□□□ -0.2
USP3-213ENST00000559711 N4BP1O75113 896 aaKnown RBP13.82□□□□□ -0.2
USP3-213ENST00000559711 TRIM49P0CI25 452 aa13.82□□□□□ -0.2
USP3-213ENST00000559711 TRIM49CP0CI26 452 aa13.82□□□□□ -0.2
USP3-213ENST00000559711 DRP2Q13474 957 aa13.82□□□□□ -0.2
USP3-213ENST00000559711 MXD4Q14582 209 aaPredicted RBP13.82□□□□□ -0.2
USP3-213ENST00000559711 ZNF484Q5JVG2 852 aa13.82□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms