RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 RAB27AP51159 221 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 PTENP60484 403 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 ATP2C1P98194 919 aaPredicted RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 CAMK1Q14012 370 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 ECM1Q16610 540 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 NAALADL2Q58DX5 795 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 IFNLR1Q8IU57 520 aaPredicted RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 KLHL23Q8NBE8 558 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 COLGALT1Q8NBJ5 622 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 RNF169Q8NCN4 708 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 HELQQ8TDG4 1101 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 HLA-CQ95604 372 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 NACC1Q96RE7 527 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 POLR3FQ9H1D9 316 aaPredicted RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 NSUN3Q9H649 340 aaKnown RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 ALG13Q9NP73 1137 aaKnown RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 FAM105AQ9NUU6 356 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 TYW1Q9NV66 732 aaKnown RBP12.17□□□□□ -0.46
SPG11-216ENST00000559347 PLAGL2Q9UPG8 496 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 GTF3C3Q9Y5Q9 886 aa12.17□□□□□ -0.46
SPG11-216ENST00000559347 PP2D1A8MPX8 630 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 TSPAN1O60635 241 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 ERLIN2O94905 339 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 CSPG5O95196 566 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 LAG3P18627 525 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 DNAJB1P25685 340 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 HOXA11P31270 313 aaPredicted RBP12.16□□□□□ -0.46
SPG11-216ENST00000559347 KCNQ1P51787 676 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 MBTD1Q05BQ5 628 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 POU5F1BQ06416 359 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 TFDP1Q14186 410 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 PDIA5Q14554 519 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 COL19A1Q14993 1142 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 PCBP1Q15365 356 aaKnown RBP eCLIP12.16□□□□□ -0.46
SPG11-216ENST00000559347 IL17AQ16552 155 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 TCEAL5Q5H9L2 206 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 LARP1BQ659C4 914 aaKnown RBP12.16□□□□□ -0.46
SPG11-216ENST00000559347 LRRC55Q6ZSA7 311 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 ABI1Q8IZP0 508 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 MCPH1Q8NEM0 835 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 SNX29Q8TEQ0 813 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 MRPL9Q9BYD2 267 aaKnown RBP12.16□□□□□ -0.46
SPG11-216ENST00000559347 NFKBIZQ9BYH8 718 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 RAB34Q9BZG1 259 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 UBE2ZQ9H832 354 aaPredicted RBP12.16□□□□□ -0.46
SPG11-216ENST00000559347 GPRC5CQ9NQ84 441 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 SSUH2Q9Y2M2 353 aa12.16□□□□□ -0.46
SPG11-216ENST00000559347 ARHGEF35A5YM69 484 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 MEIS3P2A8K0S8 358 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 INO80B-WBP1J3KQ70 363 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 ZNF623O75123 536 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 SKIP12755 728 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 AMHR2Q16671 573 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 CSPP1Q1MSJ5 1256 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 AAK1Q2M2I8 961 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 UBXN11Q5T124 520 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 SPOUT1Q5T280 376 aaKnown RBP12.15□□□□□ -0.46
SPG11-216ENST00000559347 CDCA2Q69YH5 1023 aaPredicted RBP12.15□□□□□ -0.46
SPG11-216ENST00000559347 PADI6Q6TGC4 694 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 DTHD1Q6ZMT9 781 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 BRAPQ7Z569 592 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 SPPL3Q8TCT6 385 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 POF1BQ8WVV4 589 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 RSPH1Q8WYR4 309 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 SYMPKQ92797 1274 aaKnown RBP12.15□□□□□ -0.46
SPG11-216ENST00000559347 LPPQ93052 612 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 MMTAG2Q9BU76 263 aaKnown RBP12.15□□□□□ -0.46
SPG11-216ENST00000559347 AAASQ9NRG9 546 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 DDX19AQ9NUU7 478 aaKnown RBP12.15□□□□□ -0.46
SPG11-216ENST00000559347 PCDHB12Q9Y5F1 795 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 STK24Q9Y6E0 443 aa12.15□□□□□ -0.46
SPG11-216ENST00000559347 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.14□□□□□ -0.47
SPG11-216ENST00000559347 VPS37CA5D8V6 355 aaPredicted RBP12.14□□□□□ -0.47
SPG11-216ENST00000559347 K7ELQ4 463 aaPredicted RBP12.14□□□□□ -0.47
SPG11-216ENST00000559347 FGF18O76093 207 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 AXLP30530 894 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 IRS1P35568 1242 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 PPM1AP35813 382 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 PBX3P40426 434 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 UBE3AQ05086 875 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 LONRF3Q496Y0 759 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 NOTUMQ6P988 496 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 MAEAQ7L5Y9 396 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 THNSL1Q8IYQ7 743 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 ADAMTS19Q8TE59 1207 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 BSNDQ8WZ55 320 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 BHMT2Q9H2M3 363 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 KIAA1024Q9UPX6 916 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 PCDHB2Q9Y5E7 798 aa12.14□□□□□ -0.47
SPG11-216ENST00000559347 PDCD11Q14690 1871 aaKnown RBP12.14□□□□□ -0.47
SPG11-216ENST00000559347 NCOR1O75376 2440 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 TRIP11Q15643 1979 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 VWA3AA6NCI4 1184 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 LRRIQ4A6NIV6 560 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 B4GALT5O43286 388 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 BMP1P13497 986 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 ARF4P18085 180 aaPredicted RBP12.13□□□□□ -0.47
SPG11-216ENST00000559347 CYP11B2P19099 503 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 PDCP20941 246 aa12.13□□□□□ -0.47
SPG11-216ENST00000559347 KCNA5P22460 613 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms