RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 IGHDP01880 384 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 C6orf222P0C671 652 aaPredicted RBP8.62□□□□□ -1.03
SPG11-213ENST00000558988 HSPD1P10809 573 aaKnown RBP8.62□□□□□ -1.03
SPG11-213ENST00000558988 BMP8BP34820 402 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 TLE2Q04725 743 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 TTBK2Q6IQ55 1244 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 ARMCX2Q7L311 632 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 EEPD1Q7L9B9 569 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 FAM160B2Q86V87 743 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 DEFB123Q8N688 67 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 CHURC1Q8WUH1 139 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 STAG1Q8WVM7 1258 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 BADQ92934 168 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 MKL1Q969V6 931 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 FAM161BQ96MY7 647 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 XYLT2Q9H1B5 865 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 ACAD9Q9H845 621 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 ATP13A1Q9HD20 1204 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 SSU72Q9NP77 194 aaKnown RBP8.62□□□□□ -1.03
SPG11-213ENST00000558988 IL17RBQ9NRM6 502 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 DIAPH3Q9NSV4 1193 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 FBXO40Q9UH90 709 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 FAM184BQ9ULE4 1060 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 CCPG1Q9ULG6 757 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 ZMIZ1Q9ULJ6 1067 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 DIS3Q9Y2L1 958 aaKnown RBP8.62□□□□□ -1.03
SPG11-213ENST00000558988 PCDHGC5Q9Y5F6 944 aa8.62□□□□□ -1.03
SPG11-213ENST00000558988 CCDC171Q6TFL3 1326 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 SYNRGQ9UMZ2 1314 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 A0A1W2PQ45 241 aaPredicted RBP8.61□□□□□ -1.03
SPG11-213ENST00000558988 A0A1W2PQY0 241 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 FGAP02671 866 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 PTGS1P23219 599 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 ACLYP53396 1101 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 AP3B2Q13367 1082 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 ACVR2BQ13705 512 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 CCDC144BQ3MJ40 725 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 MUM1L1Q5H9M0 696 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 RCSD1Q6JBY9 416 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 CWC27Q6UX04 472 aaKnown RBP8.61□□□□□ -1.03
SPG11-213ENST00000558988 CHD1LQ86WJ1 897 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 PHF6Q8IWS0 365 aaKnown RBP eCLIP8.61□□□□□ -1.03
SPG11-213ENST00000558988 CCDC144CPQ8IYA2 1237 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 CHST13Q8NET6 341 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 ISL2Q96A47 359 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 LIN7BQ9HAP6 207 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 A1CFQ9NQ94 594 aaKnown RBP8.61□□□□□ -1.03
SPG11-213ENST00000558988 STARD7Q9NQZ5 370 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 PDLIM7Q9NR12 457 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 SEPT3Q9UH03 358 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 NRBP1Q9UHY1 535 aa8.61□□□□□ -1.03
SPG11-213ENST00000558988 DNAJC25-GNG10A0A024R161 153 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 TRIM43BA6NCK2 446 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 ATP2A1O14983 1001 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 ORC4O43929 436 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 SDSP20132 328 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 OAZ1P54368 228 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 BEX3Q00994 111 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 TCERG1LQ5VWI1 586 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 MFSD6Q6ZSS7 791 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 NPAS4Q8IUM7 802 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 TBC1D10CQ8IV04 446 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 FBXO16Q8IX29 292 aaPredicted RBP8.6□□□□□ -1.03
SPG11-213ENST00000558988 SMC5Q8IY18 1101 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 TRIM43Q96BQ3 446 aaPredicted RBP8.6□□□□□ -1.03
SPG11-213ENST00000558988 FGD4Q96M96 766 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 TMEM47Q9BQJ4 181 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 SPC25Q9HBM1 224 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 SYNPO2Q9UMS6 1093 aa8.6□□□□□ -1.03
SPG11-213ENST00000558988 SUPT16HQ9Y5B9 1047 aaKnown RBP8.6□□□□□ -1.03
SPG11-213ENST00000558988 LTBP2Q14767 1821 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 ZNF536O15090 1300 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 NEDD4P46934 1319 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.59□□□□□ -1.03
SPG11-213ENST00000558988 A0A1W2PP55 124 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 PTPDC1A2A3K4 754 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 DCDC2CA8MYV0 355 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 ADCY6O43306 1168 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 CLTBP09497 229 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 GOLGA8HP0CJ92 632 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 TOP1P11387 765 aaKnown RBP8.59□□□□□ -1.03
SPG11-213ENST00000558988 RAG1P15918 1043 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 MFAP1P55081 439 aaKnown RBP8.59□□□□□ -1.03
SPG11-213ENST00000558988 NUCB1Q02818 461 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 SHHQ15465 462 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 ALX1Q15699 326 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 LRIT3Q3SXY7 679 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 C9orf50Q5SZB4 431 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 AKNAD1Q5T1N1 836 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 SYDE2Q5VT97 1194 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 MSL3Q8N5Y2 521 aaKnown RBP8.59□□□□□ -1.03
SPG11-213ENST00000558988 SLC17A8Q8NDX2 589 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 NUP133Q8WUM0 1156 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 DCAF4Q8WV16 495 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 GLT1D1Q96MS3 346 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 CPVLQ9H3G5 476 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 ABHD16BQ9H3Z7 469 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 ZNF576Q9H609 170 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 SEMA3GQ9NS98 782 aa8.59□□□□□ -1.03
SPG11-213ENST00000558988 TMEM39AQ9NV64 488 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms