RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 OLFML3Q9NRN5 406 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 KCNG1Q9UIX4 513 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 GINS2Q9Y248 185 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 GDAQ9Y2T3 454 aa10.6□□□□□ -0.71
CUX1-216ENST00000558469 A0A087WZ62 844 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 M0QZ92 97 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 GCNT3O95395 438 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 RPLP2P05387 115 aaKnown RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 CTSHP09668 335 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 MYBP10242 640 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 BMP6P22004 513 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 CASP5P51878 434 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 NCKAP1LP55160 1127 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 NLRP12P59046 1061 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 MRPS6P82932 125 aaKnown RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 FAAP100Q0VG06 881 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 TRIM71Q2Q1W2 868 aaKnown RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 ZC2HC1CQ53FD0 456 aaPredicted RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 ZNF658Q5TYW1 1059 aaPredicted RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 ZNF720Q7Z2F6 126 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 HAUS6Q7Z4H7 955 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 RPAINQ86UA6 219 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 CCDC155Q8N6L0 562 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 TRIML1Q8N9V2 468 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 KIAA0895Q8NCT3 520 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 SLC17A8Q8NDX2 589 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 TMEM161BQ8NDZ6 487 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 GLIS3Q8NEA6 775 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 SPIRE2Q8WWL2 714 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 TOX2Q96NM4 488 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 FIZ1Q96SL8 496 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 FDXACB1Q9BRP7 624 aaPredicted RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 CELF4Q9BZC1 486 aaKnown RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 GTPBP4Q9BZE4 634 aaKnown RBP10.59□□□□□ -0.71
CUX1-216ENST00000558469 ADAMTS10Q9H324 1103 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 CDHR5Q9HBB8 845 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 IFT122Q9HBG6 1241 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 MAPK8IP1Q9UQF2 711 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 CDY2AQ9Y6F7 541 aa10.59□□□□□ -0.71
CUX1-216ENST00000558469 ADGRA3Q8IWK6 1321 aa10.58□□□□□ -0.71
CUX1-216ENST00000558469 DENND3A2RUS2 1198 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 H0YCG3 227 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 K7ERI5 159 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 CSDE1O75534 798 aaKnown RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 PRPF6O94906 941 aaKnown RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 CHRNA1P02708 482 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 MAPTP10636 758 aaKnown RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 CKBP12277 381 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 PRCPP42785 496 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 PHKA2P46019 1235 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 CRYBB1P53674 252 aaPredicted RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 PTENP60484 403 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 POU5F1BQ06416 359 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 BFSP2Q13515 415 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 ZNF618Q5T7W0 954 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 CDCA2Q69YH5 1023 aaPredicted RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 STXBP4Q6ZWJ1 553 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 EPM2AIP1Q7L775 607 aaPredicted RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 ZNF410Q86VK4 478 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 ZBTB8OSQ8IWT0 167 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 ZNF710Q8N1W2 664 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 OSMRQ99650 979 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 GCOM2Q9BZD3 368 aaPredicted RBP10.58□□□□□ -0.72
CUX1-216ENST00000558469 C2orf40Q9H1Z8 148 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 MINDY3Q9H8M7 445 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 ARHGAP28Q9P2N2 729 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 TRPV2Q9Y5S1 764 aa10.58□□□□□ -0.72
CUX1-216ENST00000558469 INO80B-WBP1J3KQ70 363 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 CAND2O75155 1236 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 CLTBP09497 229 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 CCDC192P0DO97 292 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 EFNA5P52803 228 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 GTF2BQ00403 316 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 TYRO3Q06418 890 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 MGAT3Q09327 533 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 KCNA1Q09470 495 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 STRN3Q13033 797 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 ALCAMQ13740 583 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 STX1AQ16623 288 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 DPCR1Q3MIW9 517 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 L1TD1Q5T7N2 865 aaKnown RBP10.57□□□□□ -0.72
CUX1-216ENST00000558469 TAS1R3Q7RTX0 852 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 NELFCDQ8IXH7 590 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 MYOCDQ8IZQ8 938 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 CAGE1Q8TC20 777 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 ZNF507Q8TCN5 953 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 STRA6Q9BX79 667 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 NFKBIZQ9BYH8 718 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 INO80BQ9C086 356 aaPredicted RBP10.57□□□□□ -0.72
CUX1-216ENST00000558469 ST6GALNAC4Q9H4F1 302 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 TMEM134Q9H6X4 195 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 TMEM39AQ9NV64 488 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 TBX20Q9UMR3 447 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 PHLPP2Q6ZVD8 1323 aa10.57□□□□□ -0.72
CUX1-216ENST00000558469 MKI67P46013 3256 aaKnown RBP10.56□□□□□ -0.72
CUX1-216ENST00000558469 PPP1R3GB7ZBB8 358 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 RBAK-RBAKDNI3L0D1 243 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 EIF3DO15371 548 aaKnown RBP eCLIP10.56□□□□□ -0.72
CUX1-216ENST00000558469 PPP1R37O75864 691 aa10.56□□□□□ -0.72
CUX1-216ENST00000558469 KIF20AO95235 890 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms