RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 CYP2J2P51589 502 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ZYXQ15942 572 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ENOX2Q16206 610 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PPP2R5EQ16537 467 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 XRRA1Q6P2D8 792 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PADI6Q6TGC4 694 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PEX26Q7Z412 305 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 SLFN11Q7Z7L1 901 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MREGQ8N565 214 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 TPCN2Q8NHX9 752 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 FAM76AQ8TAV0 307 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 SLC16A10Q8TF71 515 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CTNNBL1Q8WYA6 563 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PACSIN1Q9BY11 444 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM39BQ9GZU3 492 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 INTS2Q9H0H0 1204 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ST6GALNAC4Q9H4F1 302 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 FAM204AQ9H8W3 233 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 VRTNQ9H8Y1 702 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 AGO4Q9HCK5 861 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ZNF277Q9NRM2 450 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 SUCLA2Q9P2R7 463 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PPP1R1BQ9UD71 204 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 EXOC7Q9UPT5 735 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 UBIAD1Q9Y5Z9 338 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 DOCK1Q14185 1865 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 COL4A5P29400 1685 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 KCNK3O14649 394 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PMM2O15305 246 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM253P0C7T8 217 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MYBL2P10244 700 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PLS3P13797 630 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 RPS12P25398 132 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ABCD1P33897 745 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 UBXN2AP68543 259 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MAPK7Q13164 816 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MTMR1Q13613 665 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CUL1Q13616 776 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 DRAP1Q14919 205 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ZSCAN26Q16670 478 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 TKFCQ3LXA3 575 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 ZC2HC1CQ53FD0 456 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CIAPIN1Q6FI81 312 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 GSPT2Q8IYD1 628 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 LRRC57Q8N9N7 239 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 BANK1Q8NDB2 785 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 U2AF1L4Q8WU68 220 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CLEC4DQ8WXI8 215 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 RFFLQ8WZ73 363 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 CAMKK2Q96RR4 588 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 NAP1L3Q99457 506 aaPredicted RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 MAF1Q9H063 256 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 KCNH7Q9NS40 1196 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PGAP2Q9UHJ9 254 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 DMGDHQ9UI17 866 aaKnown RBP7.89□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM59LQ9UK28 342 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 DNAJC12Q9UKB3 198 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PPME1Q9Y570 386 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 EP400Q96L91 3159 aa7.89□□□□□ -1.15
VPS13C-206ENST00000558338 PFASO15067 1338 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 ZNF536O15090 1300 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 SMCHD1A6NHR9 2005 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 GOLGA6CA6NDK9 693 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM88BA6NKF7 163 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 DDX3XO00571 662 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS13C-206ENST00000558338 ZBED4O75132 1171 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 GOLGA6DP0CG33 693 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 ITGB5P18084 799 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 GGCXP38435 758 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 RARRES1P49788 294 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 LSM11P83369 360 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS13C-206ENST00000558338 KRT76Q01546 638 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 KIF22Q14807 665 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 EZH2Q15910 746 aaKnown RBP7.88□□□□□ -1.15
VPS13C-206ENST00000558338 TMEM92Q6UXU6 159 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 MIGA2Q7L4E1 593 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 USP37Q86T82 979 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 RHOT2Q8IXI1 618 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 C4orf19Q8IY42 314 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 RASGEF1CQ8N431 466 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 SLC30A5Q8TAD4 765 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 MICAL1Q8TDZ2 1067 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 MS4A14Q96JA4 679 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 SH3GL2Q99962 352 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.88□□□□□ -1.151e-7■■□□□ 11.9
VPS13C-206ENST00000558338 SLITRK6Q9H5Y7 841 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 SLC38A10Q9HBR0 1119 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 MYOZ2Q9NPC6 264 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 ANKEF1Q9NU02 776 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 FBXO28Q9NVF7 368 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 GOLGA6AQ9NYA3 693 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 WRAP73Q9P2S5 460 aaPredicted RBP7.88□□□□□ -1.15
VPS13C-206ENST00000558338 AMFRQ9UKV5 643 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 SAMM50Q9Y512 469 aa7.88□□□□□ -1.15
VPS13C-206ENST00000558338 TMCO5BA8MYB1 307 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 WDR64B1ANS9 1081 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 DDX39AO00148 427 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 WNT10BO00744 389 aa7.87□□□□□ -1.15
VPS13C-206ENST00000558338 CTNND1O60716 968 aaKnown RBP7.87□□□□□ -1.15
VPS13C-206ENST00000558338 ALAS1P13196 640 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms