RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 ZSWIM4Q9H7M6 989 aa16.36■□□□□ 0.21
SHMT2-235ENST00000557740 BMP2KQ9NSY1 1161 aaPredicted RBP16.36■□□□□ 0.21
SHMT2-235ENST00000557740 RGL1Q9NZL6 768 aa16.36■□□□□ 0.21
SHMT2-235ENST00000557740 CARNS1A5YM72 827 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 ZC3H11AO75152 810 aaKnown RBP eCLIP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 CA8P35219 290 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 NEK4P51957 841 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 CYP4A11Q02928 519 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 SMC1AQ14683 1233 aaKnown RBP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 BMS1Q14692 1282 aaKnown RBP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 LONRF3Q496Y0 759 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 XKR9Q5GH70 373 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 LLGL2Q6P1M3 1020 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 SLC39A11Q8N1S5 342 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 ZNF579Q8NAF0 562 aaKnown RBP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 TCP11Q8WWU5 503 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 PRPF31Q8WWY3 499 aaKnown RBP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 TNFRSF25Q93038 417 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 LPPQ93052 612 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 TMEM169Q96HH4 297 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 DYDC2Q96IM9 177 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 FAM105AQ9NUU6 356 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 MUTYHQ9UIF7 546 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 INPP5FQ9Y2H2 1132 aa16.35■□□□□ 0.21
SHMT2-235ENST00000557740 ARIH1Q9Y4X5 557 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-235ENST00000557740 HIDE1A8MVS5 230 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 SRGAP2CP0DJJ0 459 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 TECP42680 631 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 BCAR1P56945 870 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 RNASELQ05823 741 aaKnown RBP16.34■□□□□ 0.21
SHMT2-235ENST00000557740 SPIRE1Q08AE8 756 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 LAMTOR4Q0VGL1 99 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 CTTNQ14247 550 aaKnown RBP16.34■□□□□ 0.21
SHMT2-235ENST00000557740 CALCRLQ16602 461 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 NOMO2Q5JPE7 1267 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 SRGAP1Q7Z6B7 1085 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 RNF135Q8IUD6 432 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 TPH2Q8IWU9 490 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 DIS3L2Q8IYB7 885 aaKnown RBP16.34■□□□□ 0.21
SHMT2-235ENST00000557740 NSUN7Q8NE18 718 aaKnown RBP16.34■□□□□ 0.21
SHMT2-235ENST00000557740 PGBD4Q96DM1 585 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 CCDC43Q96MW1 224 aaKnown RBP16.34■□□□□ 0.21
SHMT2-235ENST00000557740 IFT122Q9HBG6 1241 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 AGPAT5Q9NUQ2 364 aa16.34■□□□□ 0.21
SHMT2-235ENST00000557740 NT5C1B-RDH14C9J2C7 533 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 JAK2O60674 1132 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 HERC4Q5GLZ8 1057 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-235ENST00000557740 ANKRD54Q6NXT1 300 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 URGCPQ8TCY9 931 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 MTRQ99707 1265 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 PHF7Q9BWX1 381 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-235ENST00000557740 TBC1D13Q9NVG8 400 aa16.33■□□□□ 0.2
SHMT2-235ENST00000557740 C2orf71A6NGG8 1288 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 BTBD18B2RXH4 712 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 NEMFO60524 1076 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 ZNF623O75123 536 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 ERLIN2O94905 339 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 TMEM184AQ6ZMB5 413 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 FERMT3Q86UX7 667 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 TMEM87AQ8NBN3 555 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 RNF149Q8NC42 400 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 CASP10Q92851 521 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 RPGRIP1Q96KN7 1286 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 EIF2AK1Q9BQI3 630 aaKnown RBP16.32■□□□□ 0.2
SHMT2-235ENST00000557740 GBP3Q9H0R5 595 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 PCDHA12Q9UN75 941 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 PCDHB2Q9Y5E7 798 aa16.32■□□□□ 0.2
SHMT2-235ENST00000557740 CNTNAP2Q9UHC6 1331 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 MEIS3P2A8K0S8 358 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 LOC730098B7Z3J9 87 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 ZBTB39O15060 712 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 ASAP2O43150 1006 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 HOXB8P17481 243 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 TFDP1Q14186 410 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 MXD4Q14582 209 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 SAFBQ15424 915 aaKnown RBP eCLIP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 TPRNQ4KMQ1 711 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 VPS52Q8N1B4 723 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 MRPL43Q8N983 215 aaKnown RBP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 SUSD6Q92537 303 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 APOL5Q9BWW9 433 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 TTC12Q9H892 705 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-235ENST00000557740 MINDY3Q9H8M7 445 aa16.31■□□□□ 0.2
SHMT2-235ENST00000557740 OFD1O75665 1012 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 SLITRK3O94933 977 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 LYPLA2O95372 231 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 TXKP42681 527 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 KCNC3Q14003 757 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 CBX2Q14781 532 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-235ENST00000557740 DDX53Q86TM3 631 aaKnown RBP16.3■□□□□ 0.2
SHMT2-235ENST00000557740 TMEM173Q86WV6 379 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-235ENST00000557740 IGSF21Q96ID5 467 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 ZBP1Q9H171 429 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 NRDE2Q9H7Z3 1164 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 RSAD1Q9HA92 442 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 XPNPEP1Q9NQW7 623 aa16.3■□□□□ 0.2
SHMT2-235ENST00000557740 MUC6Q6W4X9 2439 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 INO80B-WBP1J3KQ70 363 aa16.29■□□□□ 0.2
SHMT2-235ENST00000557740 DGAT1O75907 488 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms