RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 RTN4RL1Q86UN2 441 aaPredicted RBP16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 TMEM87AQ8NBN3 555 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 DEPTORQ8TB45 409 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 DDX12PQ92771 950 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 PYM1Q9BRP8 204 aaKnown RBP16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 KBTBD4Q9NVX7 518 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 SERTAD1Q9UHV2 236 aa16.41■□□□□ 0.22
VIPAS39-210ENST00000557466 COL4A6Q14031 1691 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 TRIOBPQ9H2D6 2365 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 CCDC169A6NNP5 214 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 TSPAN1O60635 241 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 TBCAO75347 108 aaKnown RBP16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 SYKP43405 635 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 ZNF131P52739 623 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 AMHR2Q16671 573 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 CSPP1Q1MSJ5 1256 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 TMCO2Q7Z6W1 182 aaPredicted RBP16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 ZBTB8OSQ8IWT0 167 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 DNAJC19Q96DA6 116 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 SLC9A7Q96T83 725 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 ADAM2Q99965 735 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 CCDC113Q9H0I3 377 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 C2orf40Q9H1Z8 148 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 TSPYL2Q9H2G4 693 aaPredicted RBP16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 C17orf75Q9HAS0 396 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 MAGEF1Q9HAY2 307 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 KMT5AQ9NQR1 393 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 AGPAT5Q9NUQ2 364 aa16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 PIN4Q9Y237 131 aaKnown RBP16.4■□□□□ 0.22
VIPAS39-210ENST00000557466 GOLGA6L4A6NEF3 574 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 GRXCR1A8MXD5 290 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 ENPP3O14638 875 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 ERLIN2O94905 339 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 AMHP03971 560 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 EDN1P05305 212 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 ATP2A2P16615 1042 aaKnown RBP16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 MYOCDQ8IZQ8 938 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 SPIRE2Q8WWL2 714 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 ZHX3Q9H4I2 956 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 PARVGQ9HBI0 331 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 ARHGAP28Q9P2N2 729 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 PHLPP2Q6ZVD8 1323 aa16.39■□□□□ 0.21
VIPAS39-210ENST00000557466 DENND3A2RUS2 1198 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 SLC16A4O15374 487 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 B4GALT5O43286 388 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 GADD45BO75293 160 aaPredicted RBP16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 PRKCBP05771 671 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 SLFN14P0C7P3 912 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 LIG1P18858 919 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 AFMP43652 599 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 NCKAP1LP55160 1127 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 PCBP1Q15365 356 aaKnown RBP eCLIP16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 LRIT3Q3SXY7 679 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 LONRF3Q496Y0 759 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 PPP4R3CPQ6ZMV5 832 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 TAS1R3Q7RTX0 852 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 SFR1Q86XK3 245 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 HERC6Q8IVU3 1022 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 GRAMD1CQ8IYS0 662 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 CEP57L1Q8IYX8 460 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 MYCT1Q8N699 235 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 TRIM9Q9C026 710 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 FZD8Q9H461 694 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 RGS18Q9NS28 235 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 LARSQ9P2J5 1176 aaKnown RBP16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 USP25Q9UHP3 1055 aa16.38■□□□□ 0.21
VIPAS39-210ENST00000557466 FNDC1Q4ZHG4 1894 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 TTLL13PA6NNM8 815 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 C9IYK1 514 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 IDEP14735 1019 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 ZSCAN20P17040 1043 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 ARF4P18085 180 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 IBSPP21815 317 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 CASP1P29466 404 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 HOXA11P31270 313 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 EFNA5P52803 228 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 MAPK6Q16659 721 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 FAM187BQ17R55 369 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 HABP4Q5JVS0 413 aaKnown RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 FAM117BQ6P1L5 589 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 CLEC17AQ6ZS10 378 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 FAM43BQ6ZT52 329 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 TMEM161BQ8NDZ6 487 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 PHOSPHO2Q8TCD6 241 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 CPB2Q96IY4 423 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 FIZ1Q96SL8 496 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 NTPCRQ9BSD7 190 aaKnown RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 LRRC27Q9C0I9 530 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 BLZF1Q9H2G9 400 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 CHST12Q9NRB3 414 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 C1orf112Q9NSG2 853 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 PRMT7Q9NVM4 692 aaPredicted RBP16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 USP20Q9Y2K6 914 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 KIAA1671Q9BY89 1806 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 CNTNAP2Q9UHC6 1331 aa16.37■□□□□ 0.21
VIPAS39-210ENST00000557466 HSFX4A0A1B0GTS1 333 aaPredicted RBP16.36■□□□□ 0.21
VIPAS39-210ENST00000557466 HSFX3A0A1B0GWH4 333 aaPredicted RBP16.36■□□□□ 0.21
VIPAS39-210ENST00000557466 FRMD3A2A2Y4 597 aa16.36■□□□□ 0.21
VIPAS39-210ENST00000557466 K7ENM7 598 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms