RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 SYNGAP1Q96PV0 1343 aa13.79□□□□□ -0.2
SHMT2-229ENST00000557348 PMM2O15305 246 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 STBD1O95210 358 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 LCA5LO95447 670 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 CCDC172P0C7W6 258 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 MAGEA9P43362 315 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 NPTX2P47972 431 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 POLGP54098 1239 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-229ENST00000557348 NPEPPSP55786 919 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 BFSP1Q12934 665 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 PLA2G4FQ68DD2 849 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 XXYLT1Q8NBI6 393 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 SLC7A3Q8WY07 619 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 JPH2Q9BR39 696 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-229ENST00000557348 PDLIM7Q9NR12 457 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 AIPL1Q9NZN9 384 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 ADAM21Q9UKJ8 722 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 TBX20Q9UMR3 447 aa13.78□□□□□ -0.2
SHMT2-229ENST00000557348 CCDC169A6NNP5 214 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 CYP2J2P51589 502 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 VAV2P52735 878 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 MCCD1P59942 119 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-229ENST00000557348 POLR2FP61218 127 aaKnown RBP13.77□□□□□ -0.21
SHMT2-229ENST00000557348 KIF5AQ12840 1032 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 BRDTQ58F21 947 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-229ENST00000557348 MAEAQ7L5Y9 396 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 ZNF467Q7Z7K2 595 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-229ENST00000557348 MSANTD4Q8NCY6 345 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 TMEM161BQ8NDZ6 487 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 ACRBPQ8NEB7 543 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 SPAG5Q96R06 1193 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 PARK7Q99497 189 aaKnown RBP13.77□□□□□ -0.21
SHMT2-229ENST00000557348 CARD6Q9BX69 1037 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 GANQ9H2C0 597 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 VIPAS39Q9H9C1 493 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 MLXIPQ9HAP2 919 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 KIAA1586Q9HCI6 787 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 TXNRD2Q9NNW7 524 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 LZTFL1Q9NQ48 299 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 GCNT4Q9P109 453 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 MORF4L1Q9UBU8 362 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 LCTP09848 1927 aa13.77□□□□□ -0.21
SHMT2-229ENST00000557348 ATP8B3O60423 1300 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 CCL15-CCL14A0A0B4J2E2 113 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 CTAGE9A4FU28 777 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 A6NNZ2 444 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 NKRFO15226 690 aaKnown RBP eCLIP13.76□□□□□ -0.21
SHMT2-229ENST00000557348 SLC16A4O15374 487 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 AKR1B10O60218 316 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 NOL4O94818 638 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 GJA5P36382 358 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 FMO5P49326 533 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 CASP4P49662 377 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 KIF11P52732 1056 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 TTLL4Q14679 1199 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 EMC2Q15006 297 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 ASIC2Q16515 512 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 CCL15Q16663 113 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 TUBB8Q3ZCM7 444 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 TDRD12Q587J7 1177 aaKnown RBP13.76□□□□□ -0.21
SHMT2-229ENST00000557348 C10orf76Q5T2E6 689 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 KLHDC7AQ5VTJ3 777 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 RPAINQ86UA6 219 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 VPS36Q86VN1 386 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 SCFD2Q8WU76 684 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 PPM1EQ8WY54 764 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 DHX33Q9H6R0 707 aaKnown RBP13.76□□□□□ -0.21
SHMT2-229ENST00000557348 IVNS1ABPQ9Y6Y0 642 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 EMSYQ7Z589 1322 aa13.76□□□□□ -0.21
SHMT2-229ENST00000557348 DENND3A2RUS2 1198 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 PDHXO00330 501 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 NOP56O00567 594 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 EPHB6O15197 1021 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 GFPT2O94808 682 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 GGPS1O95749 300 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 UCHL3P15374 230 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 GARTP22102 1010 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 PON1P27169 355 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 NAMPTP43490 491 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 STAT5BP51692 787 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 C1QTNF8P60827 252 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 SP2Q02086 613 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 SP4Q02446 784 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 CCDC122Q5T0U0 273 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 MAP1SQ66K74 1059 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 PLPPR4Q7Z2D5 763 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 SRGAP1Q7Z6B7 1085 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 FAM71BQ8TC56 605 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 TCP11Q8WWU5 503 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 JAKMIP2Q96AA8 810 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 MS4A4AQ96JQ5 239 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 IFIH1Q9BYX4 1025 aaKnown RBP13.75□□□□□ -0.21
SHMT2-229ENST00000557348 ZNF408Q9H9D4 720 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 POLD4Q9HCU8 107 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 HSPBP1Q9NZL4 362 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 ARHGAP20Q9P2F6 1191 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 ARHGAP28Q9P2N2 729 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 RBAK-RBAKDNI3L0D1 243 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 LGR5O75473 907 aa13.75□□□□□ -0.21
SHMT2-229ENST00000557348 CPP00450 1065 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms