RNA–Protein interactions for RNA: ENST00000556992.1

SRP54-212, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 529 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-212ENST00000556992 ZNF589Q86UQ0 364 aaPredicted RBP5.23□□□□□ -1.57
SRP54-212ENST00000556992 TAB3Q8N5C8 712 aaPredicted RBP5.23□□□□□ -1.57
SRP54-212ENST00000556992 TMEM87AQ8NBN3 555 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 NETO2Q8NC67 525 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 APPBP2Q92624 585 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 SEC62Q99442 399 aaKnown RBP5.23□□□□□ -1.57
SRP54-212ENST00000556992 SRRDQ9UH36 339 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 NUDT5Q9UKK9 219 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 SMC3Q9UQE7 1217 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 ATP6V1DQ9Y5K8 247 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 MED23Q9ULK4 1368 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 SCN11AQ9UI33 1791 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 ZNF536O15090 1300 aa5.23□□□□□ -1.57
SRP54-212ENST00000556992 WDR33Q9C0J8 1336 aaKnown RBP5.23□□□□□ -1.57
SRP54-212ENST00000556992 SIPA1L3O60292 1781 aaPredicted RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 C2orf71A6NGG8 1288 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 ZNF213O14771 459 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 IDH1O75874 414 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 BAG4O95429 457 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 EPHX1P07099 455 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 CYP21A2P08686 494 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 C6P13671 934 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 GNAT2P19087 354 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 THBS2P35442 1172 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 ADD2P35612 726 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 DEKP35659 375 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 MCAMP43121 646 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 PHKA1P46020 1223 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 EXOSC10Q01780 885 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 ALX1Q15699 326 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 GNPTABQ3T906 1256 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 C9orf131Q5VYM1 1079 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 VPS37DQ86XT2 251 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 ZFPM1Q8IX07 1006 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 Q8N1X5 172 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 FBXL16Q8N461 479 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 ZGPATQ8N5A5 531 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 LINC00482Q8N8I6 264 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 CHST13Q8NET6 341 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 SH3RF3Q8TEJ3 882 aaPredicted RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 CPA5Q8WXQ8 436 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 OSBP2Q969R2 916 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 C11orf84Q9BUA3 381 aaPredicted RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 NACAP1Q9BZK3 213 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 KLHL25Q9H0H3 589 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 LRP2BPQ9P2M1 347 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 SRP68Q9UHB9 627 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 DIS3Q9Y2L1 958 aaKnown RBP5.22□□□□□ -1.57
SRP54-212ENST00000556992 BACE2Q9Y5Z0 518 aa5.22□□□□□ -1.57
SRP54-212ENST00000556992 RGPD5Q99666 1765 aa5.21□□□□□ -1.57
SRP54-212ENST00000556992 C7orf72A4D263 438 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 E7EWF7 191 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 M0R2C6 588 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 PLSCR1O15162 318 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 DHX16O60231 1041 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 BBOX1O75936 387 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 FGAP02671 866 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 APPP05067 770 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 IMPDH2P12268 514 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 CPA1P15085 419 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 PDE6AP16499 860 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 NCLP19338 710 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 TM4SF1P30408 202 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 HIBADHP31937 336 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 MCM5P33992 734 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 C1QTNF8P60827 252 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 TRDNQ13061 729 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 RASGRF1Q13972 1273 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 SLC9A5Q14940 896 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 SPTY2D1Q68D10 685 aaPredicted RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 HEATR6Q6AI08 1181 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 CD300LDQ6UXZ3 194 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 CCDC129Q6ZRS4 1044 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 NOL8Q76FK4 1167 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 CNBD1Q8NA66 436 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 ZNF274Q96GC6 653 aaPredicted RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 SAMD11Q96NU1 681 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 STRBPQ96SI9 672 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 LLPHQ9BRT6 129 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 SSBP3Q9BWW4 388 aaPredicted RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 PUS7LQ9H0K6 701 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 PIH1D3Q9NQM4 214 aaKnown RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 MARCH2Q9P0N8 246 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 CLEC1BQ9P126 229 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 WHRNQ9P202 907 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 CGGBP1Q9UFW8 167 aaPredicted RBP5.21□□□□□ -1.58
SRP54-212ENST00000556992 DENND2AQ9ULE3 1009 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 TPCN1Q9ULQ1 816 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 ZDHHC9Q9Y397 364 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 KIF3AQ9Y496 699 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 ZNF609O15014 1411 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 MAST3O60307 1309 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 ZNF532Q9HCE3 1301 aa5.21□□□□□ -1.58
SRP54-212ENST00000556992 RPAP1Q9BWH6 1393 aaPredicted RBP5.2□□□□□ -1.58
SRP54-212ENST00000556992 NPHP3-ACAD11A0A0J9YXS1 232 aa5.2□□□□□ -1.58
SRP54-212ENST00000556992 TCRBV5S4A2TA0A5A2 114 aa5.2□□□□□ -1.58
SRP54-212ENST00000556992 DDX3XO00571 662 aaKnown RBP eCLIP5.2□□□□□ -1.58
SRP54-212ENST00000556992 GPAA1O43292 621 aa5.2□□□□□ -1.58
SRP54-212ENST00000556992 STX6O43752 255 aa5.2□□□□□ -1.58
SRP54-212ENST00000556992 PFKFB2O60825 505 aa5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms