RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 ORC3Q9UBD5 711 aaPredicted RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 DNAI1Q9UI46 699 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 RCOR1Q9UKL0 485 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 TPCN1Q9ULQ1 816 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LRRFIP2Q9Y608 721 aaKnown RBP3.29□□□□□ -1.88
SLIRP-208ENST00000556956 SIGLEC1Q9BZZ2 1709 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 PREX1Q8TCU6 1659 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 QRICH2Q9H0J4 1663 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 UGGT1Q9NYU2 1555 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 LRRC7Q96NW7 1537 aa3.29□□□□□ -1.88
SLIRP-208ENST00000556956 ATP7BP35670 1465 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CD163L1Q9NR16 1453 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CDK12Q9NYV4 1490 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CRB1P82279 1406 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NPATQ14207 1427 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 POGZQ7Z3K3 1410 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 A0A1B0GUL7 405 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 C7orf72A4D263 438 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 IQCA1LA6NCM1 817 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 USP27XA6NNY8 438 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SLC27A2O14975 620 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SMAD7O15105 426 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NPHP1O15259 732 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NOBOXO60393 691 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 EIF3JO75822 258 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 URI1O94763 535 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SMC2O95347 1197 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 TUBBP07437 444 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 HMGB1P09429 215 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 MSL3P1P0C860 447 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 GLI4P10075 376 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 PLS3P13797 630 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CPA1P15085 419 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 TACR1P25103 407 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CASQ1P31415 396 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CEBPAP49715 358 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NCKAP1LP55160 1127 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 FOXO4P98177 505 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 PTH1RQ03431 593 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SCRN1Q12765 414 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 EIF4A2Q14240 407 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SMC1AQ14683 1233 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 BRD3Q15059 726 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 ZSCAN26Q16670 478 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 GORABQ5T7V8 394 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NAA16Q6N069 864 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 PPP1R42Q7Z4L9 355 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NME9Q86XW9 330 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CPNE8Q86YQ8 564 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 DCP2Q8IU60 420 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 TRIM59Q8IWR1 403 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 DHX40Q8IX18 779 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 DNAJC10Q8IXB1 793 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 FAM178BQ8IXR5 827 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 MSL3Q8N5Y2 521 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 FAM169BQ8N8A8 192 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SLC43A3Q8NBI5 491 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CCDC191Q8NCU4 936 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CPA5Q8WXQ8 436 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 ALG3Q92685 438 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 GOLGA1Q92805 767 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 MAP4K1Q92918 833 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 GTF3C6Q969F1 213 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 KISS1RQ969F8 398 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 DDX11Q96FC9 970 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 TSPAN17Q96FV3 270 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 PGBD1Q96JS3 809 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 MPHOSPH8Q99549 860 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 UBXN6Q9BZV1 441 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 FAM107BQ9H098 131 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 USP44Q9H0E7 712 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 NKX2-4Q9H2Z4 354 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 ARFGAP3Q9NP61 516 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 GEMIN8Q9NWZ8 242 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 SUSD2Q9UGT4 822 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 TIMM13Q9Y5L4 95 aaPredicted RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 RBM8AQ9Y5S9 174 aaKnown RBP3.28□□□□□ -1.88
SLIRP-208ENST00000556956 PIK3C2BO00750 1634 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 ABCC3O15438 1527 aa3.28□□□□□ -1.88
SLIRP-208ENST00000556956 CLTCQ00610 1675 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MYO1CO00159 1063 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 IKBKBO14920 756 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 DHX16O60231 1041 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ERLIN1O75477 346 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 TADA3O75528 432 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RPS6KA5O75582 802 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 FUCA1P04066 466 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 HSP90B1P14625 803 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 OAS2P29728 719 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ACTN2P35609 894 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 MAGEA9P43362 315 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 LIMS1P48059 325 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 EVCP57679 992 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RPL11P62913 178 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 ST3GAL1Q11201 340 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 G3BP1Q13283 466 aaKnown RBP eCLIP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 KCNAB2Q13303 367 aa3.27□□□□□ -1.89
SLIRP-208ENST00000556956 RRS1Q15050 365 aaKnown RBP3.27□□□□□ -1.89
SLIRP-208ENST00000556956 SF3A1Q15459 793 aaKnown RBP3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms