RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 BMS1Q14692 1282 aaKnown RBP20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 GLB1LQ6UWU2 654 aa20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 CATSPER4Q7RTX7 472 aa20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 BCL7CQ8WUZ0 217 aaPredicted RBP20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 IGSF21Q96ID5 467 aa20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 INO80BQ9C086 356 aaPredicted RBP20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 NRDE2Q9H7Z3 1164 aa20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 DDX25Q9UHL0 483 aaKnown RBP20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 INPP5FQ9Y2H2 1132 aa20.53■□□□□ 0.88
VIPAS39-209ENST00000556909 MYO15AQ9UKN7 3530 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 EML1O00423 815 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 PDGFBP01127 241 aaPredicted RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 GALTP07902 379 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 WEE2P0C1S8 567 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 CTSAP10619 480 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 AVPR2P30518 371 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 MTHFRP42898 656 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 RAB27AP51159 221 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 POLGP54098 1239 aaPredicted RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 PSMC5P62195 406 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 MTMR3Q13615 1198 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 NONOQ15233 471 aaKnown RBP eCLIP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 INF2Q27J81 1249 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 NOMO2Q5JPE7 1267 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 RARS2Q5T160 578 aaKnown RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 GALNT17Q6IS24 598 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 DDX53Q86TM3 631 aaKnown RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 FAM177A1Q8N128 213 aaPredicted RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 LARP6Q9BRS8 491 aaKnown RBP20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 CYP26B1Q9NR63 512 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 AGPAT5Q9NUQ2 364 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 DZANK1Q9NVP4 752 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 VAV3Q9UKW4 847 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 SORCS3Q9UPU3 1222 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 IRAK3Q9Y616 596 aa20.52■□□□□ 0.88
VIPAS39-209ENST00000556909 PLXNA3P51805 1871 aa20.52■□□□□ 0.87
VIPAS39-209ENST00000556909 CARNS1A5YM72 827 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 B4GALT3O60512 393 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 ZNF623O75123 536 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 OFD1O75665 1012 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 EPCAMP16422 314 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 KIAA1841Q6NSI8 718 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 C12orf76Q8N812 135 aaPredicted RBP20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 ZNF274Q96GC6 653 aaPredicted RBP20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 RIPOR3Q96MK2 946 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 JPH2Q9BR39 696 aaPredicted RBP20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 VN1R3Q9BXE9 311 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 IFT122Q9HBG6 1241 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 DNAJB4Q9UDY4 337 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 CYP46A1Q9Y6A2 500 aa20.51■□□□□ 0.87
VIPAS39-209ENST00000556909 BRD1O95696 1058 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 QARSP47897 775 aaKnown RBP20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 SLC11A1P49279 550 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 RNASELQ05823 741 aaKnown RBP20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 STK3Q13188 491 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 PPP2R5CQ13362 524 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 GIT2Q14161 759 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 LETM2Q2VYF4 491 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 KANK3Q6NY19 840 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 KRT25Q7Z3Z0 450 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 UBALD2Q8IYN6 164 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 SLC22A17Q8WUG5 538 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 GBP3Q9H0R5 595 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 SMOC2Q9H3U7 446 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 KCNMB3Q9NPA1 279 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 KCNJ14Q9UNX9 436 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 COL4A3BPQ9Y5P4 624 aa20.5■□□□□ 0.87
VIPAS39-209ENST00000556909 TDRD15B5MCY1 1934 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 EPB41L2O43491 1005 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 NPEPPSP55786 919 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 CPLX2Q6PUV4 134 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 ZNF579Q8NAF0 562 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 TDRD5Q8NAT2 981 aaKnown RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 TMEM87AQ8NBN3 555 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 SLC7A3Q8WY07 619 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 PGBD4Q96DM1 585 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 FAM86C1Q9NVL1 165 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 WRAP73Q9P2S5 460 aaPredicted RBP20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 PCDHB2Q9Y5E7 798 aa20.49■□□□□ 0.87
VIPAS39-209ENST00000556909 PTPN14Q15678 1187 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 AGMOQ6ZNB7 445 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 ZNF280BQ86YH2 543 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 FEZF2Q8TBJ5 459 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 URGCPQ8TCY9 931 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 PHF20Q9BVI0 1012 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 TM6SF1Q9BZW5 370 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 DHX33Q9H6R0 707 aaKnown RBP20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 MINDY3Q9H8M7 445 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 DBR1Q9UK59 544 aaKnown RBP20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 CFAP54Q96N23 3096 aa20.48■□□□□ 0.87
VIPAS39-209ENST00000556909 CCDC194A0A1B0GVG4 234 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 DKC1O60832 514 aaKnown RBP eCLIP20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 ASGR2P07307 311 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 AFF1P51825 1210 aaKnown RBP20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 ATAT1Q5SQI0 421 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 ZDHHC14Q8IZN3 488 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 PSPC1Q8WXF1 523 aaKnown RBP20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 TMEM143Q96AN5 459 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 CEP170P1Q96L14 293 aa20.47■□□□□ 0.87
VIPAS39-209ENST00000556909 FAM20AQ96MK3 541 aa20.47■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 213.2 ms