RNA–Protein interactions for RNA: ENST00000556256.1

SCFD1-218, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 428 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-218ENST00000556256 SUPT20HQ8NEM7 779 aa5.34□□□□□ -1.55
SCFD1-218ENST00000556256 SCLYQ96I15 445 aa5.34□□□□□ -1.55
SCFD1-218ENST00000556256 WDR11Q9BZH6 1224 aa5.34□□□□□ -1.55
SCFD1-218ENST00000556256 C14orf93Q9H972 538 aaKnown RBP5.34□□□□□ -1.55
SCFD1-218ENST00000556256 POLR3BQ9NW08 1133 aaPredicted RBP5.34□□□□□ -1.55
SCFD1-218ENST00000556256 EIF2B4Q9UI10 523 aaKnown RBP5.34□□□□□ -1.55
SCFD1-218ENST00000556256 SPATA31A6Q5VVP1 1343 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 EFCAB14O75071 495 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 APPP05067 770 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 TMEM177Q53S58 311 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 OTOP1Q7RTM1 612 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 IGSF22Q8N9C0 903 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 SLC43A3Q8NBI5 491 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 CPPED1Q9BRF8 314 aaPredicted RBP5.33□□□□□ -1.56
SCFD1-218ENST00000556256 BOCQ9BWV1 1114 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 SLC46A2Q9BY10 475 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 HAPLN2Q9GZV7 340 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 SYBUQ9NX95 663 aa5.33□□□□□ -1.56
SCFD1-218ENST00000556256 COL11A2P13942 1736 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-218ENST00000556256 TMEM200CA6NKL6 621 aa5.32□□□□□ -1.56
SCFD1-218ENST00000556256 ITGB6P18564 788 aa5.32□□□□□ -1.56
SCFD1-218ENST00000556256 LONRF2Q1L5Z9 754 aa5.32□□□□□ -1.56
SCFD1-218ENST00000556256 TTC38Q5R3I4 469 aa5.32□□□□□ -1.56
SCFD1-218ENST00000556256 CCDC62Q6P9F0 684 aa5.32□□□□□ -1.56
SCFD1-218ENST00000556256 EPN1Q9Y6I3 576 aaPredicted RBP5.32□□□□□ -1.56
SCFD1-218ENST00000556256 UBA6A0AVT1 1052 aaPredicted RBP5.31□□□□□ -1.56
SCFD1-218ENST00000556256 DVL2O14641 736 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 ZNF185O15231 689 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 MTSS1O43312 755 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 KRT37O76014 449 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 PTH2RP49190 550 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 KIF11P52732 1056 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 METTL24Q5JXM2 366 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 EPHA10Q5JZY3 1008 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 ARHGEF19Q8IW93 802 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 LCORLQ8N3X6 602 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 LILRA3Q8N6C8 439 aaPredicted RBP5.31□□□□□ -1.56
SCFD1-218ENST00000556256 OR52N2Q8NGI0 321 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 CPEB1Q9BZB8 566 aaKnown RBP5.31□□□□□ -1.56
SCFD1-218ENST00000556256 CCDC113Q9H0I3 377 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 RSAD1Q9HA92 442 aa5.31□□□□□ -1.56
SCFD1-218ENST00000556256 TCRBV16S1A1N1A0A5B0 115 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 CCDC85CA6NKD9 419 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 NPTXRO95502 500 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 CFBP00751 764 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 TYRP1P17643 537 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 APOBEC3AP31941 199 aaPredicted RBP5.3□□□□□ -1.56
SCFD1-218ENST00000556256 BCAR1P56945 870 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 VPS72Q15906 364 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 PRR16Q569H4 304 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 TRIM61Q5EBN2 209 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 IQSEC1Q6DN90 963 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 CMTR2Q8IYT2 770 aaKnown RBP5.3□□□□□ -1.56
SCFD1-218ENST00000556256 TUBGCP5Q96RT8 1024 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 PDCD2LQ9BRP1 358 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 NDC1Q9BTX1 674 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 ENKD1Q9H0I2 346 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 SYNPO2Q9UMS6 1093 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.3□□□□□ -1.56
SCFD1-218ENST00000556256 INSL6Q9Y581 213 aa5.3□□□□□ -1.56
SCFD1-218ENST00000556256 NCR1O76036 304 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 TCF3P15923 654 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 FOXI1Q12951 378 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 MYBPC3Q14896 1274 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 PRAMEF9Q5VWM5 478 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 OSBPL6Q9BZF3 934 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 AKIP1Q9NQ31 210 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 ACSS2Q9NR19 701 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 ING3Q9NXR8 418 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 TRPM5Q9NZQ8 1165 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 DKK2Q9UBU2 259 aa5.29□□□□□ -1.56
SCFD1-218ENST00000556256 KDM2BQ8NHM5 1336 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 A0A0A6YYJ9 748 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 RNASET2O00584 256 aaKnown RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 DNAJC6O75061 913 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 NDUFA10O95299 355 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 AVPR1BP47901 424 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 MECP2P51608 486 aaKnown RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 SEC24CP53992 1094 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 ARHGAP44Q17R89 818 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 HDGFL2Q7Z4V5 671 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 BRAPQ7Z569 592 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 FGD2Q7Z6J4 655 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 FAM83AQ86UY5 434 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 FAM98AQ8NCA5 519 aaKnown RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 GLB1L3Q8NCI6 653 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 SIMC1Q8NDZ2 872 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 LINC00476Q8WZB0 136 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 RPGRQ92834 1020 aaKnown RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 COQ10AQ96MF6 247 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 UIMC1Q96RL1 719 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 EPC1Q9H2F5 836 aa5.28□□□□□ -1.56
SCFD1-218ENST00000556256 TESQ9UGI8 421 aaKnown RBP5.28□□□□□ -1.56
SCFD1-218ENST00000556256 GDF7Q7Z4P5 450 aa5.27□□□□□ -1.57
SCFD1-218ENST00000556256 CAVIN3Q969G5 261 aa5.27□□□□□ -1.57
SCFD1-218ENST00000556256 SOX7Q9BT81 388 aa5.27□□□□□ -1.57
SCFD1-218ENST00000556256 LRFN3Q9BTN0 628 aa5.27□□□□□ -1.57
SCFD1-218ENST00000556256 LSM14BQ9BX40 385 aaKnown RBP5.27□□□□□ -1.57
SCFD1-218ENST00000556256 PITHD1Q9GZP4 211 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-218ENST00000556256 POLR2AP24928 1970 aaKnown RBP5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms