RNA–Protein interactions for RNA: ENST00000555759.1

SYNE3-204, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 2

Gene SYNE3, Length 5,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-204ENST00000555759 NEDD4P46934 1319 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 O00370 1275 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 CALB1P05937 261 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 GPS1Q13098 491 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 ATP6V1E2Q96A05 226 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 VPS39Q96JC1 886 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 ADA2Q9NZK5 511 aa18.64■□□□□ 0.57
SYNE3-204ENST00000555759 PNMA6FA0A0J9YX94 578 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 TMEM120BA0PK00 339 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 SCP2P22307 547 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PSMA2P25787 234 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 SOX5P35711 763 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 TCP10Q12799 353 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PI16Q6UXB8 463 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 HACE1Q8IYU2 909 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 C10orf88Q9H8K7 445 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PAPOLBQ9NRJ5 636 aaKnown RBP18.63■□□□□ 0.57
SYNE3-204ENST00000555759 DYNLL1P63167 89 aaKnown RBP18.63■□□□□ 0.57
SYNE3-204ENST00000555759 KIF19Q2TAC6 998 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PPM1NQ8N819 430 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 OR2W6PQ8NHA6 318 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ANKRD40Q6AI12 368 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PACS2Q86VP3 889 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PKD2L2Q9NZM6 624 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 TRIM10Q9UDY6 481 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ADRM1Q16186 407 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 USPL1Q5W0Q7 1092 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 DDX56Q9NY93 547 aaKnown RBP18.63■□□□□ 0.57
SYNE3-204ENST00000555759 RAB21Q9UL25 225 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 PLEKHG2Q9H7P9 1386 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ENO1P06733 434 aaKnown RBP18.63■□□□□ 0.57
SYNE3-204ENST00000555759 IL10P22301 178 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ATP2B4P23634 1241 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 CYTH1Q15438 398 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 COA7Q96BR5 231 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 BHMT2Q9H2M3 363 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 SLC38A10Q9HBR0 1119 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 SEPT3Q9UH03 358 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ZNF229Q9UJW7 825 aa18.63■□□□□ 0.57
SYNE3-204ENST00000555759 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.63■□□□□ 0.57
SYNE3-204ENST00000555759 ASAP2O43150 1006 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 HSD17B3P37058 310 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 SLC1A1P43005 524 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 AP3B2Q13367 1082 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 CMTM5Q96DZ9 223 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 MAP4P27816 1152 aaKnown RBP18.62■□□□□ 0.57
SYNE3-204ENST00000555759 HSPA13P48723 471 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 MRPS15P82914 257 aaKnown RBP18.62■□□□□ 0.57
SYNE3-204ENST00000555759 NAB2Q15742 525 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 PBXIP1Q96AQ6 731 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 STRIP2Q9ULQ0 834 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 KYNUQ16719 465 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 RFX8Q6ZV50 586 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 DDI1Q8WTU0 396 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 CCSER1Q9C0I3 900 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 UBN1Q9NPG3 1134 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 KLHL2O95198 593 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 KRT8P05787 483 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 KDSRQ06136 332 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 NAF1Q96HR8 494 aaKnown RBP18.62■□□□□ 0.57
SYNE3-204ENST00000555759 NSL1Q96IY1 281 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 TRIM51Q9BSJ1 452 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 NPHS2Q9NP85 383 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 IP6K2Q9UHH9 426 aa18.62■□□□□ 0.57
SYNE3-204ENST00000555759 TFDP1Q14186 410 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 TBCCQ15814 346 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 TXNRD1Q16881 649 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 PAPD7Q5XG87 772 aaKnown RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 SFR1Q86XK3 245 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 TMEM35BQ8NCS4 154 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 MAML3Q96JK9 1138 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 INTS2Q9H0H0 1204 aaKnown RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 RHOBTB3O94955 611 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 GNAT1P11488 350 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 RAPGEF5Q92565 580 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 ERP44Q9BS26 406 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 TMBIM4Q9HC24 238 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 DDX28Q9NUL7 540 aaKnown RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 PSMC3IPQ9P2W1 217 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 TTC7AQ9ULT0 858 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 H7C1W4 665 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 LONRF1Q17RB8 773 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 CCDC195A0A1B0GUA6 201 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 E2F6O75461 281 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 KRT75O95678 551 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 UBTFL6P0CB48 400 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 DSG1Q02413 1049 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 HP1BP3Q5SSJ5 553 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 GLYCTKQ8IVS8 523 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 SYN2Q92777 582 aaPredicted RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 SERPINB12Q96P63 405 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 ZBTB18Q99592 522 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 MRGBPQ9NV56 204 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 SEL1LQ9UBV2 794 aa18.61■□□□□ 0.57
SYNE3-204ENST00000555759 DBR1Q9UK59 544 aaKnown RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 PDS5AQ29RF7 1337 aaKnown RBP18.61■□□□□ 0.57
SYNE3-204ENST00000555759 ZNF233A6NK53 670 aa18.6■□□□□ 0.57
SYNE3-204ENST00000555759 ATP6V1G2O95670 118 aa18.6■□□□□ 0.57
SYNE3-204ENST00000555759 SMARCA1P28370 1054 aa18.6■□□□□ 0.57
SYNE3-204ENST00000555759 PIGOQ8TEQ8 1089 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms